Pairwise Alignments

Query, 303 a.a., D-alanyl-D-alanine endopeptidase (RefSeq) from Shewanella amazonensis SB2B

Subject, 310 a.a., penicillin-binding protein 7 (VIMSS) from Escherichia coli BW25113

 Score =  350 bits (897), Expect = e-101
 Identities = 179/294 (60%), Positives = 223/294 (75%), Gaps = 5/294 (1%)

Query: 7   KYISPLLMLGLLSAT--SAQGAVKSDAKPTQ---ELASYSALLVDTKTNEVLYASNPHQV 61
           K+   L  L L+ A   + Q   K+ A  T    E+AS SA++VD  TN+V+Y+++P  V
Sbjct: 3   KFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLV 62

Query: 62  VPIASISKLMTAMVTLDAKLPLGEKIAVEVKDNPEMKNVVSRIRLGSTLSRKEAMLLTLM 121
            PIASISKLMTAMV LDA+LPL EK+ V++   PEMK V SR+RL S +SRK+ +LL LM
Sbjct: 63  RPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVYSRVRLNSEISRKDMLLLALM 122

Query: 122 SSENRAATTLAHHYPGGYQAFVKAMNAKAKALGMTNTRFVEPTGLSVHNVSTAADLVKLL 181
           SSENRAA +LAHHYPGGY+AF+KAMNAKAK+LGM NTRFVEPTGLSVHNVSTA DL KLL
Sbjct: 123 SSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGLSVHNVSTARDLTKLL 182

Query: 182 KAAQDYPLLGQLSSTPSKSVTFGKPRYSLAFYNTNRLVNKDNWDIRLTKTGFTDAAGHCL 241
            A++ YPL+GQLS+T     TF  P Y+L F NTN LV +DNW+I+LTKTGFT+AAGHCL
Sbjct: 183 IASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCL 242

Query: 242 VMLTKMAKRDVAFVVLDSFGKQTHLGDAGRLKKWLETGKVSPLPDSAKTYKEQR 295
           VM T +  + VA VV+D+FGK TH  DA RL+ W+ETGKV P+P +A +YK+Q+
Sbjct: 243 VMRTVINNKPVALVVMDAFGKYTHFADASRLRTWIETGKVMPVPAAALSYKKQK 296