Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (RefSeq) from Shewanella amazonensis SB2B

Subject, 568 a.a., Inner membrane protein translocase component YidC, long form from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  348 bits (894), Expect = e-100
 Identities = 192/557 (34%), Positives = 306/557 (54%), Gaps = 31/557 (5%)

Query: 4   QRNLLLIGLLFVSFLLWQQWESDKAPKPATEVTAAAQIHDQAINSDVP--TADAGVPATV 61
           +R++L +       L+W +W+     KP     +A  +   A ++  P  +  AGVP++ 
Sbjct: 5   RRSILWVVFGLSMVLIWDKWQIHNGHKPTFFPGSAPAVTAPAASTSQPAGSTSAGVPSST 64

Query: 62  AATQNLIL---------------VTTDQLEIQINPVGGDIVHAALLTH-----KLEQNEE 101
            AT    +               VTTD  ++  N  GG ++ A LL H     + +   E
Sbjct: 65  QATAAPGVETPAAAPGAVAQRHEVTTDLFKLVFNSEGGSLIGAELLKHAEATGQSKDKTE 124

Query: 102 APFVLLEQKNNFSYIAQSGLIGRDGIDSAASGRAKFAAAADAYTLADGQDTLEVPLTLTT 161
            PF LL Q     Y+AQ+GLIG     +  + +       +  +LADGQ+ L+V      
Sbjct: 125 RPFTLLAQGGEHIYVAQTGLIG----GNFPTHKTPMTLVGNPTSLADGQNELQVRFESAE 180

Query: 162 DAGVTFTKVFVFKRGQFDVGVDYRVANNSAAPVQVQMYGQ-IKQTITASESSMMMPTYRG 220
             GV   K + F RG++D+GV + V N     V  Q+Y Q ++     S  +    T+ G
Sbjct: 181 VGGVKLIKTYTFTRGRYDIGVQHEVKNVGGQAVTPQLYQQLVRDGSKLSSETPFYSTFTG 240

Query: 221 AAFSTADVRYEKYSFDDMGKKDLE--EPTLGGWVAMLQHYFVSAWVPAAADKNTLFTSVS 278
            A  T + +Y+K  F ++ K   E  +    G+VAM+QHYF SAW+         F    
Sbjct: 241 PAVYTNEKKYQKIEFANIEKDKAEFVKTASDGYVAMVQHYFASAWLLGEGVARENFARKI 300

Query: 279 AGGLANIGFKGSVHDVAPGATETISATFYVGPKDQAALSALSDTLNLVVDYGFLWWLAVP 338
              L  +G   ++  + PG +++  +  ++GP+++  L  ++  L LV DYG+L  LA P
Sbjct: 301 DNNLFAVGSITALTAIEPGQSQSQQSRLFLGPQEEKVLETIAPGLELVKDYGWLTILAKP 360

Query: 339 IHWILMFFQSLVHNWGVAIILVTLTVRGLLYPLTKAQYVSMAKMRNLQPKLQDLKDRFGD 398
           ++W+L      V NWG AI+L+ + ++   Y L  + Y SMAKM+ + P++ ++++R   
Sbjct: 361 LYWLLEKIHGYVANWGWAIVLLVVLIKAAFYWLNASAYRSMAKMKKINPRIMEMRERLKG 420

Query: 399 DRQKMGQAMMELYKKEKVNPMGGCLPILLQMPIFIALYWVLLESVELRHAPFMLWIQDLS 458
           + Q+M Q MM++Y++EKVNP+GGC PIL+Q+P+FIALYWVLL SVE+R+AP+M WI DLS
Sbjct: 421 NPQQMQQEMMKIYREEKVNPLGGCFPILIQIPVFIALYWVLLSSVEMRNAPWMAWITDLS 480

Query: 459 VQDPYYVLPLLMGASMWAMQKMQPMAPNMDPMQQKMLQWMPMIFTVFFLWFPAGLVLYWL 518
             DPY++LPL+M  +      + P+ P  DP+Q K++  MP++F+V F +FP+GLVLYW+
Sbjct: 481 SPDPYFILPLVMAVTTLIQTALNPLPP--DPLQAKLMWLMPLMFSVMFFFFPSGLVLYWI 538

Query: 519 VGNLVAITQQKIIYASL 535
             N++ I QQ +I  S+
Sbjct: 539 TNNVLTIAQQAVINRSM 555