Pairwise Alignments

Query, 541 a.a., inner membrane protein, 60 kDa (RefSeq) from Shewanella amazonensis SB2B

Subject, 548 a.a., Inner membrane protein translocase component YidC, long form from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  550 bits (1418), Expect = e-161
 Identities = 280/548 (51%), Positives = 375/548 (68%), Gaps = 16/548 (2%)

Query: 1   MESQRNLLLIGLLFVSFLLWQQWESDKAPKPATEVTAAAQIHDQAINSDVPTADAGVPAT 60
           M+SQRNLL+I LLFVSF++WQ WE DK P+P T+ T   Q    A  S    AD GVPA+
Sbjct: 1   MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQTQQTT--QTTTTAAGS---AADQGVPAS 55

Query: 61  VAATQNLILVTTDQLEIQINPVGGDIVHAALLTHKLEQNEEAPFVLLEQKNNFSYIAQSG 120
                 +I V TD L++ IN  GGD+  A L  +  E     PF LLE    F Y AQSG
Sbjct: 56  --GQGKMITVKTDVLDLTINTRGGDVEQALLPAYPKELGSNEPFQLLETTPQFIYQAQSG 113

Query: 121 LIGRDGIDSAASG-RAKFAAAADAYTLADGQDTLEVPLTLTTDAGVTFTKVFVFKRGQFD 179
           L GRDG D+ A+G R  +    +A+ LADGQ+ L+VP+T T  AG TFTK FVFKRG + 
Sbjct: 114 LTGRDGPDNPANGPRPLYNVEKEAFVLADGQNELQVPMTYTDAAGNTFTKTFVFKRGDYA 173

Query: 180 VGVDYRVANNSAAPVQVQMYGQIKQTIT------ASESSMMMPTYRGAAFSTADVRYEKY 233
           V V+Y V N    P++V  +GQ+KQ++          S+  + T+RGAA+ST D +YEKY
Sbjct: 174 VNVNYSVQNAGEKPLEVSTFGQLKQSVNLPPHRDTGSSNFALHTFRGAAYSTPDEKYEKY 233

Query: 234 SFDDMG-KKDLEEPTLGGWVAMLQHYFVSAWVPAAADKNTLFTSVSAGGLANIGFKGSVH 292
            FD +   ++L   + GGWVAMLQ YF +AW+P     N  +T+    G+  IG+K    
Sbjct: 234 KFDTIADNENLNVSSKGGWVAMLQQYFATAWIPRNDGTNNFYTANLGNGIVAIGYKAQPV 293

Query: 293 DVAPGATETISATFYVGPKDQAALSALSDTLNLVVDYGFLWWLAVPIHWILMFFQSLVHN 352
            V PG T  +++T +VGP+ Q  ++A++  L+L VDYG+LW+++ P+  +L +  S V N
Sbjct: 294 LVQPGQTGAMTSTLWVGPEIQDKMAAVAPHLDLTVDYGWLWFISQPLFKLLKWIHSFVGN 353

Query: 353 WGVAIILVTLTVRGLLYPLTKAQYVSMAKMRNLQPKLQDLKDRFGDDRQKMGQAMMELYK 412
           WG +II++T  VRG++YPLTKAQY SMAKMR LQPK+Q +++R GDD+Q+  Q MM LYK
Sbjct: 354 WGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRQSQEMMALYK 413

Query: 413 KEKVNPMGGCLPILLQMPIFIALYWVLLESVELRHAPFMLWIQDLSVQDPYYVLPLLMGA 472
            EKVNP+GGC P+++QMPIF+ALY++L+ S+ELRHAPF LWI DLS QDPYY+LP+LMG 
Sbjct: 414 AEKVNPLGGCFPLIIQMPIFLALYYMLMGSIELRHAPFALWIHDLSAQDPYYILPILMGV 473

Query: 473 SMWAMQKMQPMAPNMDPMQQKMLQWMPMIFTVFFLWFPAGLVLYWLVGNLVAITQQKIIY 532
           +M+ +QKM P     DPMQQK++ +MP+IFTVFFLWFP+GLVLY++V NLV I QQ++IY
Sbjct: 474 TMFFIQKMSPTTVT-DPMQQKIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQQLIY 532

Query: 533 ASLEKKGL 540
             LEK+GL
Sbjct: 533 RGLEKRGL 540