Pairwise Alignments

Query, 300 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

Subject, 286 a.a., High-affinity branched-chain amino acid transport system permease protein LivH from Xanthobacter sp. DMC5

 Score =  127 bits (318), Expect = 4e-34
 Identities = 94/291 (32%), Positives = 140/291 (48%), Gaps = 23/291 (7%)

Query: 9   QQAINAISLGSLYAMVAVGLSMVFGILRMTNFAHGDMMMAGSYATVLLTVA-GLPFGVAV 67
           Q   N +  G L A+ A+ L++VF +LR  N+A G M+  G+Y         GLP  +A 
Sbjct: 3   QLIFNGLVTGLLIALPALSLALVFSVLRFANYAIGAMLTVGAYLVYGFNAGLGLPLPIAA 62

Query: 68  VCGVGVSVLVGVLAERIAYRPVRGAPDVTLLLTSLALTYVLENLAILIFSSSPR------ 121
           + G   +  + ++  R+ Y  +R    VTLL+ S+ +   LEN    I  SS R      
Sbjct: 63  LAGSLAAAGLALVINRLVYDRLRDRGGVTLLVASIGVGIALENAVRFIAGSSTRGFQVDV 122

Query: 122 AMPLPDWMGEVYSFSDGAITFTGIDLCATVLALCSLLGLGWFVTR-TTTGLGMRAAAEDM 180
           A P+  W   +             +   T++ +   L L W + R T  G  MRA A++ 
Sbjct: 123 ARPVRLWGLRINH-----------EQIVTIITVLVALTLVWVIFRYTRLGRAMRAVADNA 171

Query: 181 AATALVGLNLNRLIVTAFAIASGFAGLAGVLWAAQSGVVDPGMGFSPLLKAFVAAIVGGF 240
              A+ G+   +++   + +++  A LAGVL     G VDP MG++ +L  F AAI+GG 
Sbjct: 172 DLAAVRGVPRGQVVTVVWVLSAVLATLAGVL-VGLDGNVDPQMGWNYVLPVFTAAILGGI 230

Query: 241 GSIAGAVMGGYLLGALEILIVGFGPPEISPYRDAIVFALLILFLLFRPGGL 291
           G+   AV G  LLG  E L      P    YR  + FA++ L LLFRP GL
Sbjct: 231 GNPMAAVAGAVLLGITEELATLVLAPH---YRTMVAFAVMALILLFRPTGL 278