Pairwise Alignments

Query, 300 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  157 bits (397), Expect = 3e-43
 Identities = 95/294 (32%), Positives = 156/294 (53%), Gaps = 12/294 (4%)

Query: 8   LQQAINAISLGSLYAMVAVGLSMVFGILRMTNFAHGDMMMAGSYATVLLTVAGLPFGV-- 65
           LQQ +N ++LGS+Y ++A+G +MV+GI+ M NFAHG++ M  +Y   +       FGV  
Sbjct: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVES 65

Query: 66  -------AVVCGVGVSVLVGVLAERIAYRPVRGAPDVTLLLTSLALTYVLENLAILIFSS 118
                   ++  + V+ + G   ERIAY+P+R +  +  L++++ ++ +L+N A +   +
Sbjct: 66  FPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQGA 125

Query: 119 SPRAMPLPDWMGEVYSFSDGAITFTGIDLCATVLALCSLLGLGWFVTRTTTGLGMRAAAE 178
             + +P             G +  T   +   V A   +  L + +  T  G   RA  +
Sbjct: 126 RQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRATQQ 185

Query: 179 DMAATALVGLNLNRLIVTAFAIASGFAGLAGVLWAAQSGVVDPGMGFSPLLKAFVAAIVG 238
           D    +++G+N +R+I   F I +  A LAGVL     G  D   GF   +KAF AA++G
Sbjct: 186 DRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAAVLG 245

Query: 239 GFGSIAGAVMGGYLLGALEILIVGFGPPEISPYRDAIVFALLILFLLFRPGGLM 292
           G GS+ GA++GG +LG  E L  G      S Y+D   F+LL++ L+FRP GL+
Sbjct: 246 GIGSLPGAMLGGIILGISESLFSGL---INSDYKDVFSFSLLVMILIFRPQGLL 296