Pairwise Alignments

Query, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 624 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  364 bits (934), Expect = e-104
 Identities = 204/498 (40%), Positives = 304/498 (61%), Gaps = 24/498 (4%)

Query: 34  PDWLPQ---NRITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLRKDSLRYTGLA 90
           P WL     + + LGLDL+GG H +L VDM A +  R + +   +RT LR+  LR+ G+ 
Sbjct: 115 PSWLASLGASPMYLGLDLRGGVHFMLQVDMQAALLRRADVLATDLRTLLREKGLRHGGIN 174

Query: 91  VRDRSVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTFDGLTGRIALADSGVQAWA 150
              +++      A  +  AR  +       +  + AD+ L          ++    +   
Sbjct: 175 RSGQTIELRAGDAQTLGAARDLIRTQFTDLQLTETADFRLVG-------TISPEAARRVQ 227

Query: 151 DKAAQQSIEIVRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAKMTFHM 210
           ++A +Q+I  +  RI+E GV EP+I +QGADRI+VQLPGV D  + K +LG+TA +   M
Sbjct: 228 EQALKQNITTLHNRINELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDILGRTATLEVRM 287

Query: 211 VGDR------ALGDGSVPAGYRLLPSADPARPGEKILVSRKVEVDGSHLTDAKPSFDQQN 264
           V +       A G G VP G    P     R G+ ++V R+V + G +LTDA+  FD Q 
Sbjct: 288 VDESVDAQAAARGTGPVPFGAERYPE----RGGQSVVVKREVLLTGENLTDAQAGFDSQT 343

Query: 265 GQWVVSFSFDGQGARRFADVTKMAVGKPFAIVLDDK----VVSAPVIREPITGGRGQISG 320
            +  V  + D +GAR F DVT+  VGK  AI+L +K    VV+APVIR  I GGR QISG
Sbjct: 344 QEAAVHLTLDAKGARVFRDVTRENVGKRMAIILFEKGRGEVVTAPVIRGEIGGGRVQISG 403

Query: 321 SFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSIRAGMIAISVGFVLVVAYMGI 380
           + T   AND A+LLRAG+L AP+ ++EERT+GP LGA++I  G  ++  GF+ +V +M +
Sbjct: 404 AMTTVEANDTALLLRAGSLAAPMEIIEERTIGPSLGAENITKGFHSVLWGFIAIVVFMCV 463

Query: 381 FYGLFGWFANVALVFNLAITLGALSLMQATLTLPGIAGLLLSLGMAVDANILINERIREE 440
           +Y +FG F+++AL FN+ + +  LS++QATLTLPGIA + L+LGMA+D+N+LINER+REE
Sbjct: 464 YYAMFGVFSSIALGFNVLLLVSLLSMLQATLTLPGIAAMALALGMAIDSNVLINERVREE 523

Query: 441 AKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIGVGTIRGFAVTISLGIIVSMF 500
            ++G     ++  G+  A++TI DSN+T+LI    L   G G +RGFAV   LGI+ SMF
Sbjct: 524 LRRGSSPQMAINAGYDHAWSTILDSNVTSLIAGIALLIFGSGPVRGFAVVHCLGILTSMF 583

Query: 501 TAITVTRLLMVIWFRRTK 518
           +++  +R ++ +W+ R K
Sbjct: 584 SSVFFSRGVVNLWYGRQK 601



 Score = 61.6 bits (148), Expect = 1e-13
 Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 3/169 (1%)

Query: 644 AGSEIRRVDSVGASVSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTK 703
           A  EI    ++G S+ AE    G  ++    IA+++++   +   FGV + + +  +V  
Sbjct: 424 APMEIIEERTIGPSLGAENITKGFHSVLWGFIAIVVFMCVYYA-MFGVFSSIALGFNVLL 482

Query: 704 TVGFFAITGMQFNLTAIAAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINE 763
            V   ++      L  IAA+   +G +I+  V++ +RVRE LR  R    +  I+   + 
Sbjct: 483 LVSLLSMLQATLTLPGIAAMALALGMAIDSNVLINERVREELR--RGSSPQMAINAGYDH 540

Query: 764 TLGRTVGTSLATFLAIIPLAVFGGEALREFALVLLFGVVLATSSSVFIA 812
                + +++ + +A I L +FG   +R FA+V   G++ +  SSVF +
Sbjct: 541 AWSTILDSNVTSLIAGIALLIFGSGPVRGFAVVHCLGILTSMFSSVFFS 589