Pairwise Alignments

Query, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 604 a.a., Protein translocase subunit SecD from Escherichia coli ECRC102

 Score =  308 bits (790), Expect = 5e-88
 Identities = 193/520 (37%), Positives = 300/520 (57%), Gaps = 47/520 (9%)

Query: 34  PDWLPQ---NRITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLRKDSLRYTGLA 90
           P WL       + LGLDL+GG H L+ VDM   +    E  ++S+R++LR+  + YT + 
Sbjct: 99  PRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVR 158

Query: 91  VRDR---SVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTFDGLTG-RIALADSGV 146
             +    S+ F  A A D      A+A L +     +  D  ++  G    R  ++D+ +
Sbjct: 159 KENNYGLSITFRDAKARD-----EAIAYLSK-----RHPDLVISSQGSNQLRAVMSDARL 208

Query: 147 QAWADKAAQQSIEIVRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAKM 206
               + A QQ+I I+R R+++ GV EP++ RQGADRI+V+LPG+ D  R K +LG TA +
Sbjct: 209 SEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATL 268

Query: 207 TFHMVGDR----ALGDGSVPAGYRLLPSADPARPGEKILVSRKVEVDGSHLTDAKPSFDQ 262
            F +V       A   G VP    +  +    R G+ +++ ++V + G H+TD+  S D+
Sbjct: 269 EFRLVNTNVDQAAAASGRVPGDSEVKQT----REGQPVVLYKRVILTGDHITDSTSSQDE 324

Query: 263 QNGQWVVSFSFDGQGARRFADVTKMAVGKPFA-------------------IVLDDKVVS 303
            N Q  V+ S D  G    ++ TK  +GKP A                   +V  ++V++
Sbjct: 325 YN-QPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVIN 383

Query: 304 APVIREPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSIRAG 363
              I+  + G   +I+G      A  L++LLRAGAL AP+ +VEERT+GP LG  +I  G
Sbjct: 384 IANIQSRL-GNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQG 442

Query: 364 MIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQ-ATLTLPGIAGLLLS 422
           + A   G ++ + +M IFY  FG  A  AL+ NL + +G +SL+  ATL++PGIAG++L+
Sbjct: 443 LEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLT 502

Query: 423 LGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIGVG 482
           L +AVDAN+LINERI+EE   GR V  +++ G++ AF++IFD+NITTLIK+ IL+++G G
Sbjct: 503 LAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTG 562

Query: 483 TIRGFAVTISLGIIVSMFTAITVTRLLMVIWFRRTKPKSL 522
            I+GFA+T  +G+  SMFTAI  TR ++ + +   + K L
Sbjct: 563 AIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKL 602