Pairwise Alignments

Query, 418 a.a., transcription termination factor Rho (NCBI) from Rhodospirillum rubrum S1H

Subject, 593 a.a., transcription termination factor Rho from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  498 bits (1282), Expect = e-145
 Identities = 247/375 (65%), Positives = 313/375 (83%), Gaps = 5/375 (1%)

Query: 44  ENDTAIFGEGVLEILQDGFGFLRAPESNYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRA 103
           E D  I  EGVLEI+ DG+GFLR+ + NYL  PDDIYVSPSQ++ FGL+TGD ++GQIR 
Sbjct: 222 EFDGIIENEGVLEIMSDGYGFLRSLDYNYLASPDDIYVSPSQIKLFGLKTGDNIKGQIRP 281

Query: 104 PKDGERYFALLKVNKINFEAPESVRHRINFDNLTPLYPDERLKLEIDDPTRKE-FTTRII 162
           PK+GE+YFALLKV  +N +  E +R RI F+ LTPL+P+ERL L     TR + F+TRI+
Sbjct: 282 PKEGEKYFALLKVASVNGKTTEEIRDRIPFEYLTPLFPEERLNLT----TRADNFSTRIV 337

Query: 163 DLITPLGKGQRALIVAPPRTGKTVMLQNVAHAISANNPEVYLIVLLIDERPEEVTDMARS 222
           DL  P+GKGQR +IVA P+TGKTV+LQ +A+AI+ N+PE +L++LLIDERPEEVTDMARS
Sbjct: 338 DLFAPIGKGQRGMIVAQPKTGKTVLLQKIANAIAENHPECHLMILLIDERPEEVTDMARS 397

Query: 223 VNGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSG 282
           V  EVVSSTFDE A RHV+V+ MV+EKAKR+VE   DVVILLDSITRLARAYNTVVPSSG
Sbjct: 398 VKAEVVSSTFDEQAERHVKVSSMVLEKAKRMVECGHDVVILLDSITRLARAYNTVVPSSG 457

Query: 283 KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSE 342
           K+L+GGVDANAL +PKRFFGAARN+E GGSLTIIATAL++TGS+MDEVIFEEFKGTGN E
Sbjct: 458 KILSGGVDANALHKPKRFFGAARNVENGGSLTIIATALVETGSKMDEVIFEEFKGTGNME 517

Query: 343 IILDRKLADRRVFPSIDIARSGTRKEELLVRKDVLSKMWVLRRILSPMGVQDAMEFLLGK 402
           + LDRKL++RR++P+ID+  SGTR+E+LL+ K+ + ++W+LR+++S M  Q+AMEFLL +
Sbjct: 518 LSLDRKLSNRRIYPAIDVPGSGTRREDLLMEKEEMQRVWILRKLMSDMTSQEAMEFLLQR 577

Query: 403 MKETKNNDDFFDAMN 417
           MK T++N +F  +MN
Sbjct: 578 MKGTRDNAEFLISMN 592



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 17/42 (40%), Positives = 30/42 (71%)

Query: 2  HLQELKSKSPADLLAFAEELEIENASNLRKQDMMFAILKQLA 43
          +++ELK +  ++L   AEEL ++N  +L+K D+++AIL Q A
Sbjct: 3  NIEELKIRLLSELKEIAEELGVKNFKSLKKDDLIYAILDQQA 44