Pairwise Alignments

Query, 352 a.a., Peptidoglycan-binding LysM (NCBI) from Rhodospirillum rubrum S1H

Subject, 674 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  105 bits (263), Expect = 3e-27
 Identities = 81/273 (29%), Positives = 116/273 (42%), Gaps = 41/273 (15%)

Query: 48  GATPGPAPGPASGALPAPAPT-SPQSAAKPLAFDILRIEKDGALVAAGRAEPGAAVILRD 106
           G   G   G    A P  AP  + Q+++    FD+LR+E DG+ V AG+A+PGA + +  
Sbjct: 169 GVFAGTDDGAPQAANPTAAPADAAQASSGTPTFDVLRVEPDGSAVIAGKAQPGAKLEILS 228

Query: 107 ERGILAEGRAGARGDWVLTPSRPLAAGDHLLSLESRDASGPPRVLDEKVAVSVPQ----- 161
              ++A+      GD+      PL  GDH L L S DA+G     +E   VSVPQ     
Sbjct: 229 NGKVIAQTTIDGTGDFAAVFDNPLPPGDHELVLRSTDANGKATQSEEVATVSVPQSKSGE 288

Query: 162 -------PASPAPVIAL---------------AQPSVGPSRLLQG--PPPVSGAAES--- 194
                  P   + V+A+               +QPS   S       P P SG A     
Sbjct: 289 LLAMVSKPGKASRVLAMPEAAPPALQPQQATPSQPSAATSETTANNTPVPSSGTAAPTAA 348

Query: 195 --------TDLVIVTVDYDESGRLSVGGTAAPGDSVRAYLDNTAIGEGVVGADGRWAVTT 246
                   T  V VT    E  ++ V G+A  G +VRA +D+  IG+    A G + +  
Sbjct: 349 GSTAVAPLTSSVQVTAVEFEGSKIFVAGSAPGGSTVRALVDDKEIGKSTTEASGHFVIEG 408

Query: 247 PSPLAPGRYTLRADAIGPGGKVGGRVEIPFLRP 279
              LA G + +  + +   G    RV +PF RP
Sbjct: 409 DVDLAVGSHIITVEELNADGTAKVRVRVPFERP 441



 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 95/362 (26%), Positives = 147/362 (40%), Gaps = 47/362 (12%)

Query: 22  VLVMGPA--PNFSPEAPKPRSGALAPGPGATPGPAPGPASGALPAPAPTSPQSAAKPLAF 79
           VL M  A  P   P+   P   + A     T    P P+SG     A  S   A    + 
Sbjct: 302 VLAMPEAAPPALQPQQATPSQPSAATSE-TTANNTPVPSSGTAAPTAAGSTAVAPLTSSV 360

Query: 80  DILRIEKDGALVAAGRAEPGAAVI--LRDERGILAEGRAGARGDWVLTPSRPLAAGDHLL 137
            +  +E +G+ +    + PG + +  L D++ I  +    A G +V+     LA G H++
Sbjct: 361 QVTAVEFEGSKIFVAGSAPGGSTVRALVDDKEI-GKSTTEASGHFVIEGDVDLAVGSHII 419

Query: 138 SLESRDASGPPRVLDEKVAVSVPQPASPAPVIALAQPSVGPSRLLQGPPPVSGAAESTDL 197
           ++E  +A G  +V   +V V   +P +    +A+  PS   S      P  + +  S   
Sbjct: 420 TVEELNADGTAKV---RVRVPFERPQTDQATVAMQAPSASSSANTTAAPAENQSTASDRA 476

Query: 198 VIVTVDYDESGRLSVGGTAAPGDSVRAYLDNTAIGEGVVG------ADGRWAVTTPSPLA 251
               +  D +    +        +  A LD    G   V       ++ R A  T     
Sbjct: 477 AFEKLRTDVAKAFGILSNLYKDQATPA-LDQAIAGRSAVVIALKSLSEFRTAAATEPDFT 535

Query: 252 P--GRYTLRAD--------------AIGPG-GKVGGRV-EIPFLRPDV-LPSPGDGGMMF 292
              G  T +A               AIG G   +  R+ E+  + P   +P    G   F
Sbjct: 536 AFAGDITGKARQLLATVEAWPNDVAAIGKGIASLASRLAELHIIAPPAPVPQVPAGPQTF 595

Query: 293 ------------VVQPGNNLWALARRVYGEGTRYTVIYEANQAQIRDPDLIYPGQIFAVP 340
                       +++ G+ LW ++RRVYG+G RYT IY AN+ QIR+PDLI PGQIF VP
Sbjct: 596 EQAPLAESQNSVIIRRGDTLWQISRRVYGQGVRYTTIYLANEDQIRNPDLIEPGQIFGVP 655

Query: 341 DQ 342
            +
Sbjct: 656 KE 657