Pairwise Alignments

Query, 1041 a.a., Periplasmic Sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

 Score =  222 bits (566), Expect = 8e-62
 Identities = 134/340 (39%), Positives = 185/340 (54%), Gaps = 18/340 (5%)

Query: 403 GYLMAGGLLVFYLGFLAFLYIRVREMSVRLSGPLSALNAMIRRIASGSYFQTAPAFDVRE 462
           GY      L+  L  LA   +    MS  ++ P+  +   + ++  G   +  P     E
Sbjct: 166 GYRNLFTSLLLILACLALSGLLALRMSRTINDPIERIKHAVNQLKDGHLEERLPTMGSHE 225

Query: 463 LDETGREVAAMGDRLGRANEELIANRE------------------ELVRARDAAQAAARA 504
           LDE    +  M + L  A+EEL  + +                  EL  AR  A  A+R 
Sbjct: 226 LDELAHGINRMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRI 285

Query: 505 KAEFLATMSHEIRTPMNAVIGMTGLLLDGPLEPRQIDYARTIQRSGEHLLGLINDILDFS 564
           K+EFLA MSHEIRTP+N ++G T LL    + PRQ+DY  TI++S ++LLG+IN+ILDFS
Sbjct: 286 KSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKSADNLLGIINEILDFS 345

Query: 565 RIDTGRLVLVDRDFSLSHEVQAVVSLCGVAASAKRLSVRIDLDRALAPGYRGDSQRLRQI 624
           +I+ G+LVL    F+L   +Q  +++   AA AK+L +   + R       GD  RL+QI
Sbjct: 346 KIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQI 405

Query: 625 LVNLVGNAVKFTDKGMVTVQGDVLKIENDIHWLRLRVVDTGCGIPRERFNDLFAAFQQLD 684
           L NLV NA+KFT +G + V+  +     D   LR+ V DTG G+  +    LF AF Q D
Sbjct: 406 LTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQAD 465

Query: 685 GSATRTHGGTGLGLAISRKLARLMGGDITVSSTPGEGSVF 724
            S  R  GGTGLGL IS++L   MGG+I V STPGEGS F
Sbjct: 466 NSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQF 505



 Score = 75.9 bits (185), Expect = 1e-17
 Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 15/226 (6%)

Query: 771 VLVAEDILENQILVQAVLEKQGHRVILAANGREALAKLRGADPVDVVLMDIQMPVMDGLD 830
           +L  +D   N +LV+ +LE  G  V+   NG  A+  ++  +  D+VLMD+QMP MDG  
Sbjct: 670 ILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQ-EELFDLVLMDVQMPGMDGRA 728

Query: 831 ACRAIRGLPPEVHFSDGRPIAGVPIIAFTADALPGDRERFLSAGMNEHLAKPLNARRLRA 890
               IR      +   G P+   PI+A TA A+  ++   L +GM+++L KP++ R+L  
Sbjct: 729 CTEQIRLWE---NTQSGNPL---PIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQ 782

Query: 891 LLGDIAAGRPLTPRSSAAPSPRKSLEAPRRLLDPE---ALAQLRTSLGEDYPIYLRAAEE 947
           ++         TP+ + A       E   ++LDPE    LA  +  L  D    L A+ +
Sbjct: 783 VVMKWTGLSLGTPQQAQAELLTNGDEL--KVLDPEEGLRLAAGKADLAADMLSMLLASLD 840

Query: 948 ALRHRARALPEALARGAFEEASQLLHGLRGTLAAFGMEAEATLCQR 993
             R   RA   A  R    E    +H L G     G+      CQR
Sbjct: 841 TDREAIRAARAADDRNGLIEQ---VHRLNGASRYCGVPQLRAACQR 883