Pairwise Alignments

Query, 1041 a.a., Periplasmic Sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  248 bits (634), Expect = 1e-69
 Identities = 174/465 (37%), Positives = 243/465 (52%), Gaps = 45/465 (9%)

Query: 490 ELVRARDAAQAAARAKAEFLATMSHEIRTPMNAVIGMTGLLLDGPLEPRQIDYARTIQRS 549
           +L  A++AA+A  R K+EFLATMSHEIRTPMN VIGMTGLLLD  L   Q  +A TI+ S
Sbjct: 465 QLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDS 524

Query: 550 GEHLLGLINDILDFSRIDTGRLVLVDRDFSLSHEVQAVVSLCGVAASAKRLSVRIDLDRA 609
           GE LL +INDILDFS+++ G+L L   +F L   V++VV +    A AK + +   +D  
Sbjct: 525 GESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPR 584

Query: 610 LAPGYRGDSQRLRQILVNLVGNAVKFTDKGMVTVQGDVLKIENDIHWLRLRVVDTGCGIP 669
           L    R D  RLRQ+L+NL GNAVKFT+KG V+++  +L   +     R  V DTG GIP
Sbjct: 585 LRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAPAMARFDVRDTGIGIP 644

Query: 670 RERFNDLFAAFQQLDGSATRTHGGTGLGLAISRKLARLMGGDITVSSTPGEGSVFSVVVP 729
            E    LF+ F Q+D S  R +GGTGLGLAISR+LA LMGG++ V S  G GS F + +P
Sbjct: 645 PEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLP 704

Query: 730 MVPLSRTPAPDGTLGDGDAERGEEPPAADVPTEAAASRALVV---LVAEDILENQILVQA 786
           +  L+                    P +  P + +  R LVV    V  D++E Q+    
Sbjct: 705 LELLA--------------------PQSAAPPDLSGHRVLVVDDNPVNCDVIERQLRAFG 744

Query: 787 VLEKQGHRVILAANGREALAKLRG-ADPVDVVLMDIQMPVMDGLDACRAIRGLPPEVHFS 845
           V   + H  + A +G   L +      P +V ++D QMPV+ G +  R I  +P      
Sbjct: 745 V---EVHACLDAGSGMGELTRAAAMGTPWEVAVVDSQMPVVTGSEMVRMIHAIP------ 795

Query: 846 DGRPIAGVPIIAFTADALPGDRERFLSAGMNEHLAKPLNARRLRALLGDIAAGRPLTPRS 905
               +AG  I+  ++  +P D+     A ++  L KPL    L   +G +          
Sbjct: 796 ---MLAGTRIVVTSSQGMPADQNDGQPA-IDAFLHKPLRQSTLLDTIGRVL--------G 843

Query: 906 SAAPSPRKSLEAPRRLLDPEALAQLRTSLGEDYPIYLRAAEEALR 950
              P+ R +  A        A  +LR  + ED P+  + A   LR
Sbjct: 844 LTGPAERPADHAEEYKASEPAAKRLRILVAEDNPVNQQVALGLLR 888



 Score =  114 bits (286), Expect = 3e-29
 Identities = 90/264 (34%), Positives = 131/264 (49%), Gaps = 15/264 (5%)

Query: 746  GDAERGEEPPAADVPTEAAASRALVVLVAEDILENQILVQAVLEKQGHRVILAANGREAL 805
            G AER  +       +E AA R L +LVAED   NQ +   +L K GH V +  +G EAL
Sbjct: 846  GPAERPADHAEEYKASEPAAKR-LRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEAL 904

Query: 806  AKLRGADPVDVVLMDIQMPVMDGLDACRAIRGLPPEVHFSDGRPIAGVPIIAFTADALPG 865
              +R   P DVVLMD+QMP MDGL+A RAIR LP           A VPI+A TA+A+ G
Sbjct: 905  EAVRLL-PYDVVLMDVQMPEMDGLEATRAIRALP--------LAAAQVPIVAMTANAMRG 955

Query: 866  DRERFLSAGMNEHLAKPLNARRLRALLGDIAAGRPLTPRSSAAPSPRKSLEAPRRLLDPE 925
            D +    AGM+ +++KP++  +L   L    +G P T  +    +P+ S    R +LD  
Sbjct: 956  DDQMCFDAGMDGYISKPIDRHKLAEALAKY-SGAPETKPAEPPAAPQNSKAVDRDVLDAL 1014

Query: 926  ALAQLRTSLGEDYPIYLRAAEEALRHRARALPEALARGAFEEASQLLHGLRGTLAAFGME 985
            A      ++ E   I ++  E+A R R          G  E+  +  H ++G  A+ G+ 
Sbjct: 1015 AADIEADTVVE---ILVKFMEDA-RTRQNNAAALAPTGDLEKVRREAHTIKGAAASLGLL 1070

Query: 986  AEATLCQRLRGDLAGGAGIAIRVE 1009
            A    C  L      G  +A +++
Sbjct: 1071 AVRDACLALEQAARAGGEVAPQID 1094