Pairwise Alignments

Query, 404 a.a., succinyl-diaminopimelate desuccinylase (NCBI) from Rhodospirillum rubrum S1H

Subject, 393 a.a., N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) from Variovorax sp. SCN45

 Score =  256 bits (654), Expect = 8e-73
 Identities = 163/393 (41%), Positives = 212/393 (53%), Gaps = 26/393 (6%)

Query: 17  LALARALVACPSVTPRDAGALDVLESALIALGFRCVRLPFGAEGGERVDNLYARRGGAGP 76
           L LA  L++ PSVTP DAG   +L   L  LGF    +  G     RV NL+A R  A  
Sbjct: 5   LQLAEQLISRPSVTPDDAGCQQILGERLALLGFTLETIESGP-ADFRVTNLWAVRRPADA 63

Query: 77  C-----FGFAGHTDVVPAG--DGWSRPPFGAEVVDGALVGRGAADMKGGIACFVAAVARL 129
                   FAGHTDVVP G  + W+  PF     DG L GRGA DMK  +A FV ++   
Sbjct: 64  AATTRTLVFAGHTDVVPTGPVEQWTSHPFTPTHRDGKLYGRGACDMKTSVAAFVTSIEDF 123

Query: 130 ISGPDSTGSISRHDPTGSIALLITGDEEGPALHGTRKVLEWMEGAGERMDLCLVGEPTNP 189
           +            +P  ++ALL+T DEEGP + GT  V   +   GE +D C+VGEPT  
Sbjct: 124 LQAVP--------EPRLTLALLLTSDEEGPGVDGTVVVCNTLAARGEVIDYCIVGEPTAV 175

Query: 190 EGLGDMIKIGRRGSLTATVTLLGRAGHVAYPHLADNPLHRLSTLTGLLLAETLDDG---- 245
           E  GDMIK GRRG+++  +T+ G  GH+AYPHLA NP+H ++     L+A     G    
Sbjct: 176 ERCGDMIKNGRRGTMSGKLTVKGVQGHIAYPHLAKNPVHSVAPALAELVAINAAGGWDAA 235

Query: 246 -TAHFQPSSLQLTSIDVGNPAANVIPAKATLRFNIRFNDRHSGESLSAWIRARCLAACDG 304
              +FQP+S Q+++   G  A+NVIP  A + FN RF+   + ESL    + R  A  D 
Sbjct: 236 SNPYFQPTSWQISNFHSGTGASNVIPGSAVIDFNFRFSTESTPESL----QQRVHAVLDA 291

Query: 305 DESGFSLVLEHSGDAFLTPPGPLSDLIATACQAVTGRRPELSTSGGTSDARFIRSHC-PV 363
            +  ++L     G  FLT PG L   +  A +  TG   ELSTSGGTSDARFI   C  V
Sbjct: 292 HQVDYTLAWTIGGLPFLTTPGELVTAVQGAIRDETGIETELSTSGGTSDARFIAKICRQV 351

Query: 364 AEFGLVGRTMHKPDERVAVADLEALSEIYRRVL 396
            E G V  ++HK DE + VA++E L  IY R L
Sbjct: 352 VELGPVNASIHKIDEHIDVAEIETLKNIYVRTL 384