Pairwise Alignments

Query, 290 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

Subject, 309 a.a., Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  121 bits (303), Expect = 2e-32
 Identities = 93/304 (30%), Positives = 147/304 (48%), Gaps = 28/304 (9%)

Query: 6   LLNLAFNGAVIGLITALAALSITLVFGIARFPNAATGDVATAGAFAGLLGPVLGSGALP- 64
           LL    NG V+G + AL AL  T+V+GI    N A G+V   GA        L    +P 
Sbjct: 4   LLQQIINGLVLGSMYALIALGYTMVYGIINLINFAHGEVLMVGALTSWTIIGLMKDGMPN 63

Query: 65  -------IILVGMATSAAVSLLFYV--VLFRALAKRSPVASLIASIGMAFFLRAVLTYFI 115
                  +I + +A   A +L F +  V +R L     +A LI +IGM+  L+ +     
Sbjct: 64  TPGWLILLIALVIACIVAATLNFVIEKVAYRPLRNSPKLAPLITAIGMSILLQTLAMIIW 123

Query: 116 GHDQRVYPLPLVRAVPFGPLRVQAADI---QVIVWAGAA--LAVTFALIHLTPIGKRMRA 170
               + YP      +P  P+ V  A I   QV++ +  A  L V   L++ T +G+ MRA
Sbjct: 124 KPTNKAYP----NLLPTDPIHVAGAVISPTQVMILSVTAFSLVVLMWLVNYTKLGRAMRA 179

Query: 171 VADNPDLARSSGINANKVMVVMWVVAGLLAGLAGTLLGVK-TVVSPEMGWDLLMPAFAAT 229
            A+NP +A   GI  + V+   +++  +LA +AG +      +    MG+   + AF A 
Sbjct: 180 TAENPRVAALMGIRPDMVISATFIIGAVLAAIAGVMYASNYGIAQHAMGFLPGLKAFTAA 239

Query: 230 ILGTIGNPLGAVLGGLLIGLAQELST--------PLVGFTYKIGVGFLVLLLTLLIRPQG 281
           + G IGN  GAV+GG+L+GL + + +         ++G  Y     F+VL++ L +RP G
Sbjct: 240 VFGGIGNLAGAVVGGILLGLIEAIGSGYIGTITGGVLGSNYSDIFAFIVLIVMLTLRPSG 299

Query: 282 LFAK 285
           L  +
Sbjct: 300 LLGE 303