Pairwise Alignments

Query, 290 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

Subject, 293 a.a., putative Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  115 bits (288), Expect = 1e-30
 Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 12/295 (4%)

Query: 4   AYLLNLAFNGAVIGLITALAALSITLVFGIARFPNAATGDVATAGAFAGLLGPVLGSGAL 63
           A+   +   G + G++ +L A+   L++  +   N A G +     FA L    L    +
Sbjct: 2   AFFFEVLIGGLLAGVMYSLVAIGFVLIYKASGVFNFAQGAMVL---FAALTFVSLLERGV 58

Query: 64  PI---ILVGMATSAAVSLLFYVVLFRALAKRSPVASLIASIGMAFFLRAVLTYFIGHDQR 120
           P     LV +AT  A++LL    + R L  RSP+   +A++G+A+ +        G    
Sbjct: 59  PFWLSFLVTLATMIALALLIERAVLRPLVGRSPITLFMATLGLAYIIEGAAQALWGAQVH 118

Query: 121 VYPLPLVRA-VPFGPLRVQAADIQVIVWAGAALAVTFALIHLTPIGKRMRAVADNPDLAR 179
              L +  A +  G L +   D+     A A + +   L + T IG  +RAVAD+P  A 
Sbjct: 119 GLELAISDAPLELGGLLLSQFDLFAAATAAALVVLLSLLFNRTRIGLALRAVADDPRAAM 178

Query: 180 SSGINANKVMVVMWVVAGLLAGLAGTLLGVKTVVSPEMGWDLLMPAFAATILGTIGNPLG 239
           S GI   +V  V+W VAG +  +AG L G +  V   +   +++ A    I+G   +  G
Sbjct: 179 SVGIRLPRVWAVVWAVAGFVGLVAGLLWGARLGVQFSLSL-VVLKALPVLIIGGFTSISG 237

Query: 240 AVLGGLLIGLAQELST----PLVGFTYKIGVGFLVLLLTLLIRPQGLFAKNSLVR 290
           A++GGL+IG +++L+     PL+G   +    +++ LL LL+RP GLF + ++ R
Sbjct: 238 AIVGGLIIGASEKLAEVYFGPLIGGGIENWFPYVLALLFLLVRPAGLFGERAIER 292