Pairwise Alignments

Query, 295 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

Subject, 323 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  233 bits (594), Expect = 4e-66
 Identities = 130/289 (44%), Positives = 188/289 (65%), Gaps = 7/289 (2%)

Query: 3   SYLLAVTVIALIYSLMTLGLNLQYGFTGLINFGVVGFFAIGAYTSALLVVAGWPILLALP 62
           SYL+ +  +A IY+L++LGL   +G  G++N G+VGF+A+GAY SALL  AG PI ++L 
Sbjct: 3   SYLVFMATLAGIYALLSLGLVTIWGQGGMVNLGLVGFYAVGAYASALLSNAGIPIGISLM 62

Query: 63  CAVAASALVSWPVALLSLRLRIEYFAIVMLGFAETIRLVVTSEGWLTGGVQGVTGIPS-L 121
           CA   +  V   ++ L+  LR +Y AIV LGFAE IRLV T+E WLTGG  G++GI S L
Sbjct: 63  CAALMAGAVGVVLSYLTRPLRGDYLAIVSLGFAEVIRLVATNEKWLTGGSDGLSGIRSPL 122

Query: 122 AAALGLSME--STLLTALVALGAVIGVVWLSRRLVASPFGRIIRAIRDDEDAVQALGKAP 179
            A LG        LL   +   A  G+V    RL  SP+GR +RA+RDDE      GK  
Sbjct: 123 KAELGAIHPWFYLLLVWAIVAAAAFGLV----RLFRSPYGRALRAVRDDEQVAAVAGKPV 178

Query: 180 GRFKVAVFVLGSASAGLAGALYAHYITYISPDQFMSLLTFYIWVAMILGGVGRVGGAVLG 239
            + K+  F +G+A +GLAG +YAH  +YI+PD F+ LLT YI++A   GG  RV GA+ G
Sbjct: 179 LQLKLKTFFVGAALSGLAGGIYAHLTSYIAPDGFVPLLTIYIFLAATAGGYTRVVGALAG 238

Query: 240 TAVLIGLMEGSRFLRDILPGVAEVEMASIRLGVIGLALMVLMRFRPEGL 288
           +  ++ L+E +RF+  ++PG+  V++AS+R  VI ++L+V+M+ +PEG+
Sbjct: 239 SLAVVALLESTRFIAAVIPGLTAVQVASLRELVIAVSLIVIMQLKPEGV 287