Pairwise Alignments

Query, 360 a.a., Putative diguanylate cyclase (GGDEF domain) (NCBI) from Rhodospirillum rubrum S1H

Subject, 496 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  127 bits (319), Expect = 6e-34
 Identities = 91/233 (39%), Positives = 121/233 (51%), Gaps = 12/233 (5%)

Query: 134 GLLVSIVFATTATVGVTILAVLDGAQGF-SW--------IAPFNLAGALAGCTVLAYFYE 184
           G L    FA  A + + +L      + F SW        +A   L   +   T+L     
Sbjct: 261 GKLRMFTFARVAQLPLIVLVAHSADEVFESWRRTAILVSVATGGLCVGILWLTLLLGREL 320

Query: 185 GTRAKAARQLETLAKSDPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHFKSIN 244
             R +A   L  LA +D LTGLANRR L            R+   L++L++D+DHFK+ N
Sbjct: 321 RRRHEAEEDLAMLASTDSLTGLANRRRLDHVLRQEWARAQRSRKPLAILMVDVDHFKAFN 380

Query: 245 DRYGHEAGDGVLCHVAHVIKGMIRAN-DLIARIGGEEFALLLPDTDLAGAREVAEKIRKA 303
            R+GH  GD  L  VA  I+  IR   DL AR GGEEF ++LP+TDLAGA+ +AE+IR  
Sbjct: 381 QRHGHAGGDHALREVAKAIEACIRRPADLAARYGGEEFQVVLPETDLAGAQLLAERIRAN 440

Query: 304 IESTALIGPGGSLSVTVSIGVAELDPQYPDFAALFSSADHRLYQAKKAGRNRV 356
           +E+ A        +VTVSIG+  L     D   L  +AD  LY+AK  GRNRV
Sbjct: 441 VEALAPFADDAH-AVTVSIGIG-LSGTQQDLGRLLGAADEALYRAKANGRNRV 491