Pairwise Alignments

Query, 705 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  301 bits (771), Expect = 1e-85
 Identities = 196/582 (33%), Positives = 293/582 (50%), Gaps = 17/582 (2%)

Query: 121  IGTVVDIHDHMEAERTIALSEERLRLALDSADLGVWECTIATNQWW-FSEAALRILGCPP 179
            + T+ DI     AE  +  SEE+   A  S+   +      + ++   ++   R+ G   
Sbjct: 516  VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYST 575

Query: 180  DAETSIETVMGAIHSDDLDGLRARWHAARTGRARDRMEGEFRIQRGGGRLGWI-ACSARL 238
            D           I +DD      +  +A     R+R     R   G  + G I      +
Sbjct: 576  DEVIGHTVYEIGIWADD------KQRSALLAELRERGRVHHREMLGRNKRGDILTVEVSV 629

Query: 239  VADDGKAVTRMLGTLRDITKTRLQREKLYHLAHFDPLTGLPNRHEMITRTQATLASGGAA 298
                   V  +L T RD+++ +  + ++ HLA+ DPLT LPNR  ++ R    +A     
Sbjct: 630  EPITLNEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689

Query: 299  GGAGAILLLDLDGFKEANDTLGQATGDALLKRIAHRLVSSLPADSLIGRVGGDEFLVVVP 358
               GA+L LDLD FK  ND+LG   GD +LK I  RL +S+  +  + R+GGDEF+V++ 
Sbjct: 690  NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLS 749

Query: 359  GVAE-----QWTATRIADGLYDVLTVPFVIGDRRIPLSGRIGIALAPRDGTSAQDLMTHA 413
            G+       +     +AD L ++L  P  +  +R+ ++  IG+AL P  GT+  DL+  A
Sbjct: 750  GLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRA 809

Query: 414  ELALQETKTISGCVTRFFSPRLHDEARERQDMGLELRRATDNGEFELFYQPQIRLSDRAV 473
            ++AL   K      T+ F   +   A ER  M  +LR A   GE  L +QPQ+   D  +
Sbjct: 810  DIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRI 869

Query: 474  VGAEALLRWRHPTRGVMPPAAFLHVLKRGPLAGEVGEWVVAKACADAAGLLNAG----SR 529
            VGAE LLRW HP  G  PP+ F+ VL+   L  EVG W++ +AC   A +L  G      
Sbjct: 870  VGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADD 929

Query: 530  IRMAVNLFSAQFKAGTVDATVRRSLLESGLPAELLELEITEKVTLDRDEGILTCLKGLRD 589
              + VN+   QF+       V RSL +  LP ++L LEITE + +   E  ++ +  L+ 
Sbjct: 930  FNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKR 989

Query: 590  LGCGVAFDDYGTGYASLSMLKRYPLTRLKIDRAFVQHLAESPKDGAIVRAVLSLGNTFGL 649
             G   A DD+GTGY+SL+ LKR P+  LKID++FV+     P D  IVRA++++  +  L
Sbjct: 990  YGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDL 1049

Query: 650  SVTAEGIEEEEQEKLLLGQGCDEGQGYFFGRPMPLADFIQFL 691
            +V AEG+E  EQ   L   GC   QGY   RP+PL +F Q L
Sbjct: 1050 AVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPEFRQML 1091



 Score = 70.9 bits (172), Expect = 3e-16
 Identities = 63/202 (31%), Positives = 93/202 (46%), Gaps = 8/202 (3%)

Query: 65  VHPEEREAVLLLWRRALREGEEFEARYRLHRGLSGYRWALGQGRPLRGDDGEVREWIGTV 124
           V+PE+R  ++    RA       E ++R   G         QG  L G    V   I T 
Sbjct: 211 VNPEQRHQIVES-TRANGGPLIMEVQFRATSGKVHDGILCTQGIELEG----VTFLISTF 265

Query: 125 VDIHDHMEAERTIALSEERLRLALDSADLGVWECTIATNQWWFSEAALRILGCPP-DAET 183
           VD  +   AE+ +  S+ERL LALDSA LG W+  I +   + S  A ++ G PP     
Sbjct: 266 VDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLPPIPFHE 325

Query: 184 SIETVMGAIHSDDLDGLRARWHAARTGRARDRMEGEFRIQRGGGRLGWIACSARLVADDG 243
           S +     +   + + +R  + + R G A    +  +R+Q   G   +I   ARL  DD 
Sbjct: 326 SFDAFFEGVPEHERNSMRQAYRSLREGPA-GNYQITYRVQLENGTSRYIESRARLYRDDQ 384

Query: 244 KAVTRMLGTLRDITKTRLQREK 265
               RM GTL DIT  +++RE+
Sbjct: 385 GIPLRMAGTLLDIT-DQVEREQ 405



 Score = 37.4 bits (85), Expect = 4e-06
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 67  PEEREAVLLLWRRALREGE--EFEARYRLHRGLSGYRWALGQGRPLRGDDGEVREWIGTV 124
           PE     +    R+LREG    ++  YR+       R+   + R  R D G      GT+
Sbjct: 335 PEHERNSMRQAYRSLREGPAGNYQITYRVQLENGTSRYIESRARLYRDDQGIPLRMAGTL 394

Query: 125 VDIHDHMEAERTIALSEER 143
           +DI D +E E+ ++ SEE+
Sbjct: 395 LDITDQVEREQRLSASEEK 413