Pairwise Alignments

Query, 705 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  317 bits (812), Expect = 2e-90
 Identities = 181/482 (37%), Positives = 272/482 (56%), Gaps = 9/482 (1%)

Query: 213  RDRMEGEFRIQRGGGRL--GWIACSARLVADDGKAVTRMLGTLRDITKTRLQREKLYHLA 270
            R   EGE  ++R  G     W+  +A  V DD   +   +    DI++ +   ++++ LA
Sbjct: 784  RGSWEGEVWLKRRDGDHYPAWVGITA--VLDDEGDLASYVCFFTDISERKASEQRIHRLA 841

Query: 271  HFDPLTGLPNRHEMITRTQATLASGGAAGGAGAILLLDLDGFKEANDTLGQATGDALLKR 330
            ++D LT LPNR     R    L           ++ LDLD FK  ND+LG A GD +LK 
Sbjct: 842  YYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLKD 901

Query: 331  IAHRLVSSLPADSLIGRVGGDEF-LVVVPGVAEQWTATR---IADGLYDVLTVPFVIGDR 386
            +A RL++ +  D  + R+GGDEF L++ P    +    R   +A+ +   L  PFV+ +R
Sbjct: 902  MALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHVAENILGSLVRPFVLENR 961

Query: 387  RIPLSGRIGIALAPRDGTSAQDLMTHAELALQETKTISGCVTRFFSPRLHDEARERQDMG 446
               ++  IGIAL+P+DG+    LM +A+ A+   K       +F+   ++  A ER ++ 
Sbjct: 962  EFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFYQAEMNASALERLELE 1021

Query: 447  LELRRATDNGEFELFYQPQIRLSDRAVVGAEALLRWRHPTRGVMPPAAFLHVLKRGPLAG 506
             +LR A +  EF L+YQPQ     + + GAEALLRWRHPTRG++PP  F+ V++   L  
Sbjct: 1022 SDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLVV 1081

Query: 507  EVGEWVVAKACADAAGLLNAGSRI-RMAVNLFSAQFKAGTVDATVRRSLLESGLPAELLE 565
            +VG+WV+ +A         A  R+ +++VN+ + QF  G +   +   L ESGLP   LE
Sbjct: 1082 DVGDWVLREASRQLKAWHKAKVRVPKVSVNISARQFSDGQLGTRIANILEESGLPPACLE 1141

Query: 566  LEITEKVTLDRDEGILTCLKGLRDLGCGVAFDDYGTGYASLSMLKRYPLTRLKIDRAFVQ 625
            LE+TE + +      L  L  L++LG  +A DD+GTGY+SL+ LK++P+  LKIDR FV 
Sbjct: 1142 LELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFVD 1201

Query: 626  HLAESPKDGAIVRAVLSLGNTFGLSVTAEGIEEEEQEKLLLGQGCDEGQGYFFGRPMPLA 685
             L E  +D  I RA++++ ++  L+V AEG+E  EQ + L   GCDE QGY FGRPMP  
Sbjct: 1202 GLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMPAH 1261

Query: 686  DF 687
             F
Sbjct: 1262 QF 1263