Pairwise Alignments

Query, 705 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  296 bits (759), Expect = 2e-84
 Identities = 169/449 (37%), Positives = 247/449 (55%), Gaps = 1/449 (0%)

Query: 239 VADDGKAVTRMLGTLRDITKTRLQREKLYHLAHFDPLTGLPNRHEMITRTQATLASGGAA 298
           + DD   ++  +    DI+  +   ++L +LAH DPLTGLPNR     R +  LA+  A 
Sbjct: 179 IRDDEGELSHYVAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQAN 238

Query: 299 GGAGAILLLDLDGFKEANDTLGQATGDALLKRIAHRLVSSLPADSLIGRVGGDEFLVVVP 358
               A+LLLDLD F+  ND LG   GD LLK +  RL   L     + R+GGDEF V+V 
Sbjct: 239 KRGCALLLLDLDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVE 298

Query: 359 GVAEQWTATRIADGLYDVLTVPFVIGDRRIPLSGRIGIALAPRDGTSAQDLMTHAELALQ 418
              +   A ++A  + + +  PF     R+ +S  +GI+L P D   A+ L+ +A+ AL 
Sbjct: 299 NCQQVGQAGKLAQCIIERMREPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALY 358

Query: 419 ETKTISGCVTRFFSPRLHDEARERQDMGLELRRATDNGEFELFYQPQIRLSDRAVVGAEA 478
           + K+        ++  L   A+ R +   ELRRA +  E  +++QP   L+    VG E 
Sbjct: 359 KAKSNGRACYALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVET 418

Query: 479 LLRWRHPTRGVMPPAAFLHVLKRGPLAGEVGEWVVAKACADAAGLLNAGSRIR-MAVNLF 537
           L+RW+HP RG++PP  F+ + +R  L  E+  WV+ +AC         G ++  + VN+ 
Sbjct: 419 LVRWQHPRRGLVPPGEFIPIAERTGLIAEIDTWVLRQACRQMVQWQAQGRQLAFVGVNIS 478

Query: 538 SAQFKAGTVDATVRRSLLESGLPAELLELEITEKVTLDRDEGILTCLKGLRDLGCGVAFD 597
           S  F    +   V   L ++GL   LLELE+TE   ++  E  L  L  LR+LG  +A D
Sbjct: 479 SRLFGQHELYRQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAID 538

Query: 598 DYGTGYASLSMLKRYPLTRLKIDRAFVQHLAESPKDGAIVRAVLSLGNTFGLSVTAEGIE 657
           D+GTGY+SL  LKR P+ +LKID+ FV  L     D AIVR +++L  + G+ V AEGIE
Sbjct: 539 DFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIE 598

Query: 658 EEEQEKLLLGQGCDEGQGYFFGRPMPLAD 686
           + EQ   LL + C  GQGY+FGRP+P  D
Sbjct: 599 QAEQASFLLQEECQLGQGYWFGRPVPAED 627