Pairwise Alignments

Query, 566 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

Subject, 548 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  124 bits (312), Expect = 7e-33
 Identities = 154/593 (25%), Positives = 254/593 (42%), Gaps = 110/593 (18%)

Query: 20  RIYWFRAKVPADLRSHYAPKTEIIYSLKTSDPREALVRVRIASVKADQEFEVARRIPKEE 79
           R+ WFR  VP  LR     K+ I +SLKT+D REA    R  + + D+E+ +A       
Sbjct: 14  RVLWFRRMVPQHLRE-IVGKSSIRFSLKTTDLREAAALCRHHAAQLDREWGLAPT--NLA 70

Query: 80  VRTSLSDDEAERLVAIYYQVRLEEDEEIRIGGKQEADLYLGVKAQLEALGIGHANYTNEE 139
           +R +++  E +  V   Y   L   ++ R   ++ AD +             HA      
Sbjct: 71  MRPTIATIE-QTAVEFGYDFALAASDQRR---REVADDH-------------HA------ 107

Query: 140 AVAEYGLSQREYQKNQETLEFMEPLYREALSTGNTEIIHDELDDILEANSIKLDRTSSQY 199
               YGL  R  + N +        Y  A +TG T  +   +  I+EA  + +     +Y
Sbjct: 108 ----YGLHMRRQEINAQQ-------YAYAAATGETSAVEPAMSAIIEAQGLNISPADPEY 156

Query: 200 RKLAFSILKATVKVLDVEKRRNSGEP-IDTPPEPPPLFKPAVTAVPANSLRLSEVFERWK 258
            +LA ++  A         RR  G+   DT  E     + A  +       ++E++E W 
Sbjct: 157 AQLATALAAAMSAAAITTGRRARGDTSADTDAEIVQRVRAAKASKAKPGETIAELYEAWA 216

Query: 259 VERKP----AKRSLMEWDTAIRRFTALYG-DKPVESITKAEVVEFKDSL----------- 302
           ++R         ++ +    + RF    G D+ ++SIT  +  +++D+L           
Sbjct: 217 LDRAQIDGATAATIEDGRKIVNRFAEFVGNDRALDSITPTDAAQWRDTLRALPPKWMSKK 276

Query: 303 ----LQQGKAAA-------------TVLKQVGAIKSTLQYAVDNGKLSV--NPATGV--- 340
               L Q  AAA              + KQ+  +    ++A    + +   NP  G+   
Sbjct: 277 ELAGLDQRAAAAKATTLGMATGSLVNINKQMSNVSPLYRWAAGQPRWAGLRNPFDGLFYQ 336

Query: 341 KVAGKRASEVRRLPYDAEDLKAIFSSPVFTCGDRPLAGSGEASFWLPLLALFTGARLNEI 400
           KV GK A    R PY+++ L AI  S         L   G    W+PL+AL TG R  E+
Sbjct: 337 KVKGKNA----RPPYNSDQLTAIIHS---------LPDDGWLR-WVPLIALATGMRTGEV 382

Query: 401 GQILVSDVRELDG---IHYLDLNTEGEGKSLKNEGSRRKVPLHPEIIRLGFLDYVRKQGE 457
            Q+   DVR+ +G   IH   ++   +G + K + S R VP+   +  LGFLD+V ++  
Sbjct: 383 CQLRAHDVRQDNGSWLIHV--VHDPAQGMATKTKVS-RFVPVSMLLEGLGFLDFVDRR-- 437

Query: 458 SLGSDSRVFDKLEPNSNGVLTANFSKWWGRYARENGIAKGQK--VFHSFRHSFKDACR-E 514
               + R+F +LE +  G   +  S+W+  +  E G+  G+     HSFRH+  D  R E
Sbjct: 438 ----EGRLFPELERDQTGEY-SKASRWFRDHLEEIGLKDGRDGLGLHSFRHTMADRLRIE 492

Query: 515 SSLPQDIHDALTGHSPNNVGGRYG---QGFTVRRLGEEMAKLSYPGLDLSGLM 564
           + L       + GHS + V   YG   QG ++ RL   +  + + G+D   L+
Sbjct: 493 AELLDSEVAVILGHSSSGVTAGYGAISQG-SINRLRGWIDAVRFDGVDFGKLI 544