Pairwise Alignments

Query, 629 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

Subject, 561 a.a., Inner membrane ABC transporter ATP-binding protein YddA from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  208 bits (530), Expect = 4e-58
 Identities = 149/512 (29%), Positives = 238/512 (46%), Gaps = 21/512 (4%)

Query: 60  QMWLNAWNQPFYDSLARKDMDGFIHQLWVFAGIAFLLLTLNVSQTWLNQSTKVKLREGLV 119
           Q+WLN WN  F+++L++K+ D     +  F  +  + + ++V++TWL +   ++ RE L 
Sbjct: 49  QVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIRWREWLT 108

Query: 120 RDLLDDWLQGRRAFRLAFNSEIGV--NPDQRIHEDARHLSELTTDLGIGLLQASLLLATF 177
              L+ W   +  +      E     NPDQRI ED   L   T  L  G +Q+  +L TF
Sbjct: 109 DYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITF 168

Query: 178 IGVLWGLSRGIVLHIDGQVLAIPGYMVWCALLYAGIASLLSWKVGSPLVRLNALRYAREA 237
             +LW  +  +   + G    I GYMV+  +L     +L + KVG  +  LN  +   EA
Sbjct: 169 TVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEA 228

Query: 238 DLRFNLVRVSEHMEGIALHGGEADERDRLSSDLDRVLGIMRRIVGAVTGLTWITAGYGWF 297
             R NLV+ ++  E IAL   E+ +R  LS +   +     R++     L +    Y   
Sbjct: 229 TFRTNLVQHNKQAELIALSNAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRS 288

Query: 298 TLVAPILVAAPGYFHGNLSFGELMMAVGAFIQVQQALRWFIDNVSAIADWRATLLRVSSF 357
             V P  +  P +  G ++ G LM +  AF+ V   L WFI     +A+  A + R+  F
Sbjct: 289 LSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDELAELAAVIDRLYEF 348

Query: 358 REGLQAMDRLGEGRGRIDFAPSTDRQVILSGLEVASPAGAISLSQPEVVIEPGQHLLIIG 417
            +       L E R   +   +    V ++   + +P   I L      + PG+ LL+ G
Sbjct: 349 HQ-------LTEQR-PTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVSPGKWLLLKG 400

Query: 418 DSGTGKTVFFRAIAGLWPWGKGRIGLPPDDDLQDREGDGVMFLPRHPYIPPGTLRAAISY 477
            SG GKT   + ++  WPW KG I  P D            ++ + P I  G L+  I  
Sbjct: 401 YSGAGKTTLLKTLSHCWPWFKGDISSPADS----------WYVSQTPLIKTGLLKEIICK 450

Query: 478 PQAADDFDDWALVEALGSMGLAHLAARLNRSARWDKELTDDERRCLAFARVALRKPKVVI 537
                  DD +L E L  +GL  LAAR++   RW   L+  E++ +A AR+ LR+PK + 
Sbjct: 451 ALPL-PVDDKSLSEILHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWIF 509

Query: 538 MDEAFDVLDDASLGRAMAIFREKLRKTIVITI 569
           +DE    L++    R + + REKL  + VI +
Sbjct: 510 LDETTSHLEEQEAIRLLRLVREKLPTSGVIMV 541