Pairwise Alignments

Query, 265 a.a., Response regulator receiver domain protein (CheY) (NCBI) from Rhodospirillum rubrum S1H

Subject, 264 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24-like from Sphingobium sp. HT1-2

 Score =  244 bits (622), Expect = 2e-69
 Identities = 132/259 (50%), Positives = 168/259 (64%), Gaps = 4/259 (1%)

Query: 5   AVSQAVVHQLPFLRRYARALCGDQIAGDEVVKAVLEVIVADPRVIPDVTDLRVRLYQLFH 64
           ++ Q +   LPFLRRYARAL G Q  GD  V+A LE IVA P   P   D R+ LY+ FH
Sbjct: 2   SLGQQLHPHLPFLRRYARALTGSQTHGDAYVRATLEAIVAAPEEFPSGVDPRLGLYKTFH 61

Query: 65  KVWMSAGSLSAPAEDA----ETDIQRRVSQLPAEDRQALLLVAMEGFTLAEAAMVLGRDD 120
            +W S+     P        E     R+++L    RQALLL A+EGFT  +A  ++G D 
Sbjct: 62  AIWSSSHLDDEPGFSGSIGQEAIAHARLARLTPLPRQALLLTALEGFTTEDAGYLIGLDT 121

Query: 121 SQTAALVDQARLAMAQQESTRVLVIEDEPIIGLDIANIVESMGHRVVGIAATRAEAEAMA 180
           +   ALV++A   +  Q   +VL+IEDEPII +DI  IV  +GH V  IA TR +A   A
Sbjct: 122 ADVEALVEEALEEIEAQTRAKVLIIEDEPIIAMDIETIVRDLGHDVTAIAVTREDAVREA 181

Query: 181 LEKKPGLVLADIQLADGSSGIDAARSILAGADIPIVFITAYPERLLTGQRPEPTYLVTKP 240
           L ++PGLVLADIQLAD SSGIDA + ILA   +P++FITA+PERLLTG+RPEPT+L+TKP
Sbjct: 182 LAERPGLVLADIQLADDSSGIDAVKDILAEFSVPVIFITAFPERLLTGERPEPTFLITKP 241

Query: 241 FAVDTVKVTIAQALFFRQA 259
           F   TVK  I+QALFF +A
Sbjct: 242 FQRSTVKAAISQALFFDEA 260