Pairwise Alignments

Query, 778 a.a., PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 773 a.a., PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  245 bits (626), Expect = 6e-69
 Identities = 186/518 (35%), Positives = 261/518 (50%), Gaps = 25/518 (4%)

Query: 262 LLTDITETRKASEQVRQREQRLDGIMKTVVDGIVVIDENGIIESFNPAAERLFGYRAEEV 321
           L+ DI+E         + E RL  ++    D I ++D +G I   N A  RL G  A   
Sbjct: 268 LVQDISERVDWEATKAENEARLRSLINATTDAIFLLDPDGAIRVINRAGARLLGTTARAA 327

Query: 322 VGASINRLIPGGESGRHDRSLRRYLQT--GQAGIIGRGREELALRRDGSLLPVELAISEL 379
            G S    +   ++          L T     GI   G   L    D  + PV     + 
Sbjct: 328 AGRSFYEFLDAPQATERRALFGEVLATLLPVNGIERWGERWL----DMVVFPV--VDGDG 381

Query: 380 RLDDRRIFTGLVRDISARKEADRQLRENEERYALAIAGTHEAIVDWDIDSDTITYSDRIT 439
           +     +FT   RDI++R+EA+ + R  E     A      A++ +D     +  +    
Sbjct: 382 KAMGVTLFT---RDITSRREAEDRARAAERHLLEATELMSAAMLLFDPQGILVLINSACR 438

Query: 440 AIVGLDPKDLDRSASWI----ALIHPDHRKDYLTRMDALLRGESSFFSCDFRLAGRAGAE 495
           A +      L    S+I    A++        +T     ++G +        + G+ G  
Sbjct: 439 AALPDLEDILHPGLSFIELRAAIVARRLFVQAITESQGGIKGGTPG-PAPIEVRGKDG-- 495

Query: 496 ERWLRHRATALRRPDGQIYRLSGAVGDITDSRRGEDRLREAKEAAEFANRAKSEFLTNMS 555
            RWL  R +A     G    L     DIT+ +R E  L +AKE AE+ANRAKSEFL NMS
Sbjct: 496 -RWLLIRQSATS--SGYTLILGT---DITELKRRERALADAKEVAEYANRAKSEFLANMS 549

Query: 556 HELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVINDILDVSRIEAG 615
           HELRTPLNAIIGFS++   +MFG L    Y+DYA +I DSG HLL++I+DILD+++IEAG
Sbjct: 550 HELRTPLNAIIGFSDITRHQMFGRLDNPVYVDYARNIYDSGTHLLEIISDILDLAKIEAG 609

Query: 616 RATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLLGEARRLKQVLINLLG 675
              L  E +D A +V S  ++V  RA +  + L   L   LP L  +  RLKQVLINLL 
Sbjct: 610 ELGLDEEEVDAARLVDSAIQMVTPRATSKRIALTNLLTGDLPRLWCDPLRLKQVLINLLS 669

Query: 676 NAIKFTPAGGEIALSARGDEDKGQMVIEVSDSGIGMAPEDIPLALEPFRQIDGQLARRYE 735
           NA+K+T   G +A++AR     G + I V D+GIGM    I +A+  F Q++   +RR  
Sbjct: 670 NAVKYTQEDGAVAVTARLAGGDG-LAISVIDTGIGMDEAGIQVAMTAFGQVESPYSRRQG 728

Query: 736 GTGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLPA 773
           GTGLGLPL++   E H G L + S PG GT +T+ LPA
Sbjct: 729 GTGLGLPLTRKLTEAHQGCLTIASRPGEGTTVTILLPA 766



 Score = 44.3 bits (103), Expect = 3e-08
 Identities = 72/277 (25%), Positives = 105/277 (37%), Gaps = 55/277 (19%)

Query: 10  DSRLIDIFDHLDEGVALYGPDHRLIRFNRPFASLVETAGGRPAPGQRMVEILRDLVAPDT 69
           ++RL  + +   + + L  PD  +   NR  A L+ T   R A G+   E L        
Sbjct: 286 EARLRSLINATTDAIFLLDPDGAIRVINRAGARLLGTTA-RAAAGRSFYEFL-------- 336

Query: 70  GEENRADSGPDDDGRGTEDDAAERLEGALLGTPTEIRLGRDRWGLVHGHRLKDGALFCVL 129
                      D  + TE  A   L G +L T   +  G +RWG     R  D  +F V+
Sbjct: 337 -----------DAPQATERRA---LFGEVLATLLPVN-GIERWG----ERWLDMVVFPVV 377

Query: 130 -------------RDITASKAGAARIAESNRRIREAESRLERALESIDQGFYLCDASDTV 176
                        RDIT+ +       E+  R R AE  L  A E +     L D    +
Sbjct: 378 DGDGKAMGVTLFTRDITSRR-------EAEDRARAAERHLLEATELMSAAMLLFDPQGIL 430

Query: 177 VLRNAKLAHLLPGLPP-LEPGTTYGAMMAAACDNGAIPAATRHRTRWLSLCMARHHLPRG 235
           VL N+     LP L   L PG ++  + AA         A       +     +   P  
Sbjct: 431 VLINSACRAALPDLEDILHPGLSFIELRAAIVARRLFVQAITESQGGI-----KGGTPGP 485

Query: 236 AWDFENGR-GRWVRVSESLTPEGGRVGLLTDITETRK 271
           A     G+ GRW+ + +S T  G  + L TDITE ++
Sbjct: 486 APIEVRGKDGRWLLIRQSATSSGYTLILGTDITELKR 522



 Score = 35.8 bits (81), Expect = 9e-06
 Identities = 69/285 (24%), Positives = 103/285 (36%), Gaps = 20/285 (7%)

Query: 270 RKASEQVRQREQRLDGIMKTVVDGIVVIDENGIIESFNPAAERLFGYRAEEVVGASINRL 329
           R+A   V     R   +      G+ ++D        N    RL G   E +     +  
Sbjct: 148 RRAEATVPCAADRFRSLFDLAPIGMAMLDGERRWRQANSVMCRLLGVPFEGLAAKRWSDS 207

Query: 330 IPGGESGRHDRSLRRYLQTGQAGIIGRGREELALRRDGSLLPVELAISELRLDDR----R 385
           +   + GR +R     L+          R   A   DG ++PV L++  +R   +    +
Sbjct: 208 VHPEDRGRDERFFASLLRNDDKASTTNLRLVAA---DGRVVPVTLSLGVMRDGPKGQSDQ 264

Query: 386 IFTGLVRDISARKEADRQLRENEERYALAIAGTHEAIVDWDIDSDTITYSDRITAIVGLD 445
           I   LV+DIS R + +    ENE R    I  T +AI   D D      +     ++G  
Sbjct: 265 ILV-LVQDISERVDWEATKAENEARLRSLINATTDAIFLLDPDGAIRVINRAGARLLGTT 323

Query: 446 PKDLDRSASWIALIHPDHRKDYLTRMDALLRGESSFFSCDFRLAGRAGAEERWLRHRATA 505
            +     + +  L  P       T   AL  GE            R G  ERWL      
Sbjct: 324 ARAAAGRSFYEFLDAPQ-----ATERRALF-GEVLATLLPVNGIERWG--ERWLDMVVFP 375

Query: 506 LRRPDGQIYRLSGAVGDITDSRRGEDRLREAK----EAAEFANRA 546
           +   DG+   ++    DIT  R  EDR R A+    EA E  + A
Sbjct: 376 VVDGDGKAMGVTLFTRDITSRREAEDRARAAERHLLEATELMSAA 420



 Score = 30.0 bits (66), Expect = 5e-04
 Identities = 64/310 (20%), Positives = 113/310 (36%), Gaps = 35/310 (11%)

Query: 7   PGLDSRLIDIFDHLDEGVALYGPDHRLIRFNRPFASLVETAGGRPAPGQRMVEILRDLVA 66
           P    R   +FD    G+A+   + R  + N     L+    G P  G         +  
Sbjct: 155 PCAADRFRSLFDLAPIGMAMLDGERRWRQANSVMCRLL----GVPFEGLAAKRWSDSVHP 210

Query: 67  PDTGEENR--ADSGPDDDGRGTEDDAAERLEGALLGTPTEIRLGRDRWGLVHGHRLKDGA 124
            D G + R  A    +DD   T +      +G ++     + + RD      G + +   
Sbjct: 211 EDRGRDERFFASLLRNDDKASTTNLRLVAADGRVVPVTLSLGVMRD------GPKGQSDQ 264

Query: 125 LFCVLRDITASKAGAARIAESNRRIREAESRLERALESIDQGFYLCDASDTVVLRNAKLA 184
           +  +++DI+      A  AE+       E+RL   + +     +L D    + + N   A
Sbjct: 265 ILVLVQDISERVDWEATKAEN-------EARLRSLINATTDAIFLLDPDGAIRVINRAGA 317

Query: 185 HLLPGLPPLEPGTTYGAMMAAACDNGAIPAATRHRTRWLSLCMARHHLPRGAWDFENGRG 244
            LL        G ++   + A       P AT  R  +  +      LP      E    
Sbjct: 318 RLLGTTARAAAGRSFYEFLDA-------PQATERRALFGEVLATL--LPVNG--IERWGE 366

Query: 245 RWVR--VSESLTPEGGRVGLLT---DITETRKASEQVRQREQRLDGIMKTVVDGIVVIDE 299
           RW+   V   +  +G  +G+     DIT  R+A ++ R  E+ L    + +   +++ D 
Sbjct: 367 RWLDMVVFPVVDGDGKAMGVTLFTRDITSRREAEDRARAAERHLLEATELMSAAMLLFDP 426

Query: 300 NGIIESFNPA 309
            GI+   N A
Sbjct: 427 QGILVLINSA 436