Pairwise Alignments

Query, 915 a.a., DNA topoisomerase (NCBI) from Rhodospirillum rubrum S1H

Subject, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

 Score =  125 bits (315), Expect = 6e-33
 Identities = 147/569 (25%), Positives = 237/569 (41%), Gaps = 91/569 (15%)

Query: 1   MHVVVVESPAKAKTINK-----------YLGKDYVVLASYGHIRDLPPKDGSVRPDEGFA 49
           M + + E P++AK I             +LG    V    GH+ +  P D      + + 
Sbjct: 1   MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDEKYKRWV 60

Query: 50  M--------DWE--IDAKSEKHVKDITQALKSADGLLLATDPDREGEAISWHVRDVLEKR 99
           +         W+  +  K+    K + + L  A  L++ATD DREGE I+   R+++E  
Sbjct: 61  LADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIA---RELVEHC 117

Query: 100 KALVGKQVQRITFNAITRSAVEEALR--NPRDLDTPLVEAYLARRALDYLVGFTLS---P 154
           +      +QR+  +A+  +++ +AL    P      L  + L R   D+L+G  +S    
Sbjct: 118 R--YRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFT 175

Query: 155 VLWRK--LPGSRSAGRVQSVALRLICEREQEVERFVSREYWTVDAILASPQGQIFRARLS 212
           +L R+    G    GRVQ+  LRL+ +R++ +  FV   YW +D  L   +   F A+  
Sbjct: 176 LLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHER-ITFTAQWR 234

Query: 213 QLDGQKLDKFGLPDETTALAALERIK-AATLRVESVERKQARRNPAAPFTTSTIQQEASR 271
             +    D+    D   A  A + ++ AAT R+  +  ++ R     PF   T+Q+  S+
Sbjct: 235 AAEDACDDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGTLQEICSK 294

Query: 272 KLYFSARQTMQVAQKLYEGVDLGGETVGLITYMRTD-------GVSIAPEAVFATRDLIG 324
           KL   A++T+ +AQ LY       ET  +ITY R+D         S AP+ + A      
Sbjct: 295 KLGLGAQETLDIAQSLY-------ETHKVITYPRSDCGYLPLSQHSEAPKILAAL----- 342

Query: 325 AEFGAAYLPEQPRVYKTKAKNA-----QEAHEAIRPTDVARTPQSVAPYLTAEQRKLYEL 379
           A   AA     P +   +   A       AH  I PT   +        LT + R +Y L
Sbjct: 343 ARADAAVNELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKD----VGQLTGKHRAVYTL 398

Query: 380 VWKRTVASQMASAILDQVAVDIADPEAKVVLHATGSVIQFDGFLKVYREDFDDRPESSPD 439
           +  R +A  + +   D+   D     A   L A G V+   G+ +         PE+   
Sbjct: 399 IRARYLAQFLPNHEYDRTQADF--DCAGQALRAVGKVVIEPGWKRAL-------PEALAP 449

Query: 440 GAGED--ENRLLPPLREGDGVKREDVKADQHFTQPPPRYTEASLVKRMEEL--------- 488
             G +    + LP L +G       V     +TQPP  +TE  L+K M+ +         
Sbjct: 450 AKGREAPAPQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLL 509

Query: 489 --------GIGRPSTYASILSVLQDREYV 509
                   GIG  +T A I+  L DR Y+
Sbjct: 510 KQKLKDTTGIGTEATRAGIIQGLLDRGYL 538