Pairwise Alignments

Query, 915 a.a., DNA topoisomerase (NCBI) from Rhodospirillum rubrum S1H

Subject, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

 Score =  439 bits (1130), Expect = e-127
 Identities = 276/704 (39%), Positives = 394/704 (55%), Gaps = 102/704 (14%)

Query: 3   VVVVESPAKAKTINKYLGKDYVVLASYGHIRDLP-------------------------- 36
           +V+VESPAKAKTINKYLG  YVV +S GHIRDLP                          
Sbjct: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPALS 64

Query: 37  PKDGSVR---------PDEGFAMDWEIDAKSEKHVKDITQALKSADGLLLATDPDREGEA 87
           PK+ + R         PD G+   +EI    EK ++++ +  K AD + LATD DREGEA
Sbjct: 65  PKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEA 124

Query: 88  ISWHVRDVLEKRKALVGKQVQRITFNAITRSAVEEALRNPRDLDTPLVEAYLARRALDYL 147
           I+WH+R+ +         + +R+ FN IT+ A++EA   P +LD   V A  ARR LD +
Sbjct: 125 IAWHLREAIGGDDT----RYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180

Query: 148 VGFTLSPVLWRKLPGSRSAGRVQSVALRLICEREQEVERFVSREYWTVDAILASPQGQIF 207
           VG+ +SP+LW K+    SAGRVQSVA++L+ ERE+E+  F+  EYW + A L + +    
Sbjct: 181 VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV 240

Query: 208 RARLSQLDGQKLDKFGLPDETTALAALERIKAATLRVESVERKQARRNPAAPFTTSTIQQ 267
           R  +++   +K + F   +E  A+AALE++KA++  V   E +     P+APF TST+QQ
Sbjct: 241 RFEVAR---EKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQ 297

Query: 268 EASRKLYFSARQTMQVAQKLYEGVDLGGETVGLITYMRTDGVSIAPEAVFATRDLIGAEF 327
            AS +L F  ++TM +AQ+LYE         G ITYMRTD  +++ +A+   R  I  EF
Sbjct: 298 AASNRLGFGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSADALDMARSYIEREF 349

Query: 328 GAAYLPEQPRVYKTKAKNAQEAHEAIRPTDVARTPQSVAPYLTAEQRKLYELVWKRTVAS 387
           G  YLPE P VY +K + AQEAHEAIRP+DV   P  ++  +  +  +LYEL+W++ +A 
Sbjct: 350 GKQYLPEAPLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSG-MERDAERLYELIWRQFLAC 407

Query: 388 QMASAILDQVAVDIADPEAKVVLHATGSVIQFDGFLKVYREDFDDRPESSPDGAGEDENR 447
           QM  A     +V +A  + +  L A G +++FDG+ +V  +      +S P   GED+  
Sbjct: 408 QMPPAQYLSTSVTVAAGDFE--LRAKGRILKFDGYTRVLPQ------QSKP---GEDD-- 454

Query: 448 LLPPLREGDGVKREDVKADQHFTQPPPRYTEASLVKRMEELGIGRPSTYASILSVLQDRE 507
           +LP + +G+ +K   +   QHFT+PP R+TEASLVK ME+ GIGRPSTYA+I+S +QDR 
Sbjct: 455 VLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRG 514

Query: 508 YVRLDARRFIPEDRGRLVTAFLENFFSRYVQYSFTADLENQLDEISDGKLGWKTVLERFW 567
           YV L  RRF  E  G +VT  L   FS  + Y FTAD+E  LD+++ G+  WK VL+ F+
Sbjct: 515 YVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFY 574

Query: 568 MDFKAAIEGTATLRVSEVLDALDKELGPHLFPQAEDG---HDPRV--CPVCSAGR-LGLR 621
            DF   ++   +                     +EDG   + P +   P    GR + +R
Sbjct: 575 GDFSKKLQTAES---------------------SEDGMRANQPTMTNIPCKECGRPMMIR 613

Query: 622 IGKFGAFVGCSNY-----PDCKFTRPLVTKEGEGGDGAALAEDG 660
               G F+GCS Y       CK T  LV      GD  A  ++G
Sbjct: 614 TASTGVFLGCSGYSLPPKERCKATVNLVP-----GDEIAADDEG 652



 Score = 34.7 bits (78), Expect = 3e-05
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 610 CPVCSAGRLGLRIGKFGAFVGCSNYPDCKFTRPLVTKEGEGGDGAALAEDGTKPLGKDPV 669
           C  C +  + L+ G+FG F GC+N P CK TR L+ K GE         D   P  K   
Sbjct: 714 CDKCGS-EMQLKTGRFGKFFGCTN-PACKNTRKLL-KSGEAAPPKMDKVD--MPELKCEK 768

Query: 670 SGEDVTLRKGPYGLYV 685
             +   LR G  GL++
Sbjct: 769 VDDTYVLRDGASGLFL 784