Pairwise Alignments

Query, 915 a.a., DNA topoisomerase (NCBI) from Rhodospirillum rubrum S1H

Subject, 865 a.a., DNA topoisomerase I, bacterial from Enterobacter asburiae PDN3

 Score =  433 bits (1114), Expect = e-125
 Identities = 265/683 (38%), Positives = 377/683 (55%), Gaps = 91/683 (13%)

Query: 3   VVVVESPAKAKTINKYLGKDYVVLASYGHIRDLPPKDGS--------------------- 41
           +V+VESPAKAKTINKYLG DYVV +S GHIRDLP    +                     
Sbjct: 5   LVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSADSTSTKGAKKPKKDER 64

Query: 42  --------VRPDEGFAMDWEIDAKSEKHVKDITQALKSADGLLLATDPDREGEAISWHVR 93
                   V P   +   +E+    EK V ++ Q  + AD + LATD DREGEAI+WH+R
Sbjct: 65  SALVNRMGVNPWHNWDAQYEVLPGKEKVVNELKQLAEKADHIYLATDLDREGEAIAWHLR 124

Query: 94  DVLEKRKALVGKQVQRITFNAITRSAVEEALRNPRDLDTPLVEAYLARRALDYLVGFTLS 153
           +V+        K+  R+ FN IT++A+ +A   P +L+   V A  ARR +D +VG+ +S
Sbjct: 125 EVIGGDD----KRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS 180

Query: 154 PVLWRKLPGSRSAGRVQSVALRLICEREQEVERFVSREYWTVDAILASPQGQIFRARLSQ 213
           P+LW+K+    SAGRVQSVA+RL+ ERE+E++ FV  E+W VDA + +P G     ++S 
Sbjct: 181 PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDANVTTPGGDALPLQVSH 240

Query: 214 LDGQKLDKFGLPDETTALAALERIKAATLRVESVERKQARRNPAAPFTTSTIQQEASRKL 273
            + +    F   +    +AA+  ++ A  +V   E K     P APF TST+QQ AS +L
Sbjct: 241 HNDKP---FRPENRDQTMAAVALLEKARYKVLEREDKPTSSKPGAPFITSTLQQAASTRL 297

Query: 274 YFSARQTMQVAQKLYEGVDLGGETVGLITYMRTDGVSIAPEAVFATRDLIGAEFGAAYLP 333
            +  ++TM +AQ+LYE         G ITYMRTD  +++ +AV   R  I   FG  YLP
Sbjct: 298 GYGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLP 349

Query: 334 EQPRVYKTKAKNAQEAHEAIRPTDVARTPQSVAPYLTAEQRKLYELVWKRTVASQMASAI 393
           E    Y +K +N+QEAHEAIRP+DV+   +S+   + A+ +KLY+L+W++ VA QM  A 
Sbjct: 350 ESANQYASK-ENSQEAHEAIRPSDVSVLAESLKD-MEADAQKLYQLIWRQFVACQMTPAK 407

Query: 394 LDQVAVDIADPEAKVVLHATGSVIQFDGFLKVYREDFDDRPESSPDGAGEDENRLLPPLR 453
            D   + +   + +  L A G +++FDG+ KV            P     DE+R LP + 
Sbjct: 408 YDSTTLTVGAGDFR--LKARGRILRFDGWTKVM-----------PALRKGDEDRTLPAVN 454

Query: 454 EGDGVKREDVKADQHFTQPPPRYTEASLVKRMEELGIGRPSTYASILSVLQDREYVRLDA 513
           +GD +   D+   QHFT+PP R++EASLVK +E+ GIGRPSTYASI+S +QDR YVR++ 
Sbjct: 455 KGDELSLVDLVPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVEN 514

Query: 514 RRFIPEDRGRLVTAFLENFFSRYVQYSFTADLENQLDEISDGKLGWKTVLERFWMDFKAA 573
           RRF  E  G +VT  LE  F   + Y FTA +E+ LD+++  +  WK VL+ F+ DF   
Sbjct: 515 RRFYAEKMGEIVTDRLEANFRELMNYDFTAQMEDSLDQVASHQAEWKKVLDSFFSDFTDQ 574

Query: 574 IEGT-------ATLRVSEVLDALDKELGPHLFPQAEDGHDPRVCPVCSAGRLGLRIGKFG 626
           +E           L    VL ++D                   CP C   ++G+R    G
Sbjct: 575 LEKAEKDPEEGGMLPNQMVLTSID-------------------CPTCGR-KMGIRTATTG 614

Query: 627 AFVGCSNY-----PDCKFTRPLV 644
            F+GCS Y       CK T  LV
Sbjct: 615 VFLGCSGYALSPKERCKTTINLV 637



 Score = 32.7 bits (73), Expect = 1e-04
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 610 CPVCSAGRLGLRIGKFGAFVGCSNYPDCKFTRPLVTKEGEGGDGAALAEDGTKPLGKDPV 669
           C  C +  + L++G+FG ++ C+N  +CK TR ++      G+ A   ED   PL + P 
Sbjct: 711 CEKCGS-EMHLKMGRFGKYMACTN-DECKNTRKIL----RNGEVAPPKEDPV-PLPELPC 763

Query: 670 SGEDV--TLRKGPYGLYV 685
              D    LR G  G+++
Sbjct: 764 EKSDAYFVLRDGAAGVFL 781