Pairwise Alignments
Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H
Subject, 1247 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Pseudomonas fluorescens SBW25
Score = 501 bits (1289), Expect = e-145
Identities = 307/813 (37%), Positives = 445/813 (54%), Gaps = 18/813 (2%)
Query: 29 APSIAEGLSAALFQSVVEALPVGTALLRDGVIVHANATLAGQIGETIDTLIGSPLTS--- 85
A ++E A++FQ + L + A L DG ++ N Q+G + +IG T+
Sbjct: 431 ALQLSEQKFASVFQQCPDILVI--ARLSDGCLLEVNKAFEDQVGLKAEDVIGKTATALNI 488
Query: 86 YLTPADALAVQKVVEGAIALHGGVPVRRIAHIRHISGSERVYSLRFSPLDNGPHPLLVVI 145
+ P + K V+ + +P R +G + P +VV+
Sbjct: 489 WGIPGIGPDLLKRVQTTSIRNLEMPFLRN------NGQAFTGLISAEPFQLDTTEAIVVV 542
Query: 146 TRDMTAQVAAENALRAAEGKYRAIFENAVEGIYQSTP-DGTYLDVNPALARIYGYASPAE 204
RD+T + L+ +E K+ F + +G+ S DG L+VN +RI G+ S A
Sbjct: 543 VRDITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQRDGLLLEVNDGFSRITGFNSAAS 602
Query: 205 LIAHFTDIASQLYVDGTKRGEFQRLMRETGEVRDFTAEVWRCDGHTIWITENARCVRGPD 264
L D+ ++VD +R LM G VRDF + R DG ++R + D
Sbjct: 603 LDQSTLDLG--IWVDLNERKHMLELMARDGFVRDFICHIRRNDGQIRLCELSSRPLPIGD 660
Query: 265 NEVLYYEGTVEDITAQRQSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLL 324
++ + DIT ++ QE ++ VF S AEG+++ + + VN AF +TG
Sbjct: 661 DDCMLT--IARDITERQLMQEKLQQAATVFESTAEGVLITDTRQNISAVNRAFSEITGYS 718
Query: 325 RQDMEGRPARLFASGLHENDFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRT 384
+ G+ RL ASGLH++ F A + ++ G W+GEI R+ G Y +T++AVR
Sbjct: 719 EAEALGQTPRLLASGLHDSAFYAAMWHQLTAQGHWQGEISNRRKNGELYPSWLTISAVRN 778
Query: 385 RAGETTHYVAAITDITKRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQ 444
R TH+VA DI+ K + + +QA+ D LT LPNR L RL+ A++ Q TG+Q
Sbjct: 779 REQLITHFVAVFADISSLKLAQARLDYQAHHDPLTGLPNRTLFESRLQAALNGHQETGKQ 838
Query: 445 VCVMFLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVE 504
V+FLDLDRFK INDS GH GD +LK A RL+ +R D+V RLGGDEFI++L ++
Sbjct: 839 GAVLFLDLDRFKHINDSLGHPIGDLLLKDIAVRLKEQLRDIDTVARLGGDEFIILLPGLQ 898
Query: 505 DQHAGAYIAEKILYSLSEPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAK 564
++A K+L + PF G E F S+G + +P+ G L++NAD AMY +K
Sbjct: 899 HASDAQHLANKLLACFTPPFQAGEHEFFISASIGTSLYPEDGTDVATLVKNADAAMYRSK 958
Query: 565 QGGERRYAIFTPDMARRSLALLTMESDLRHALARDEFELHFQPKVR-ADLTLIGAEALIR 623
G R +T D+ ++ + +E +LR A+ RDE L++QPK+ A LIGAEALIR
Sbjct: 959 AKGRNRVESYTRDLTAQANERVALEHELRRAIERDELSLYYQPKLSLATQQLIGAEALIR 1018
Query: 624 WRHPEKGLINPGDFIPLAEESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQ 683
W HP G + P FI LAEE+G IL IG W L +AC ++ +W+ +SVN++ Q
Sbjct: 1019 WHHPTFGDVPPEHFIALAEENGTILQIGDWVLEQACRQLHAWQGTFDDFGPLSVNLAGAQ 1078
Query: 684 FQDQTLVETVRQILVETGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFG 743
+ L+ + Q+L + GL+P L LEITE + E A+ L LK LGV L+IDDFG
Sbjct: 1079 LRHPGLLGRIEQLLRDYGLDPGRLQLEITENFIMSQAEEALEVLHQLKHLGVQLAIDDFG 1138
Query: 744 TGYSSLNYLKTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIE 803
TGYSSL+YLK P+D LKIDQ+FVR + DAAIV IIAL ++ F+++AEGVE
Sbjct: 1139 TGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDAAIVRAIIALGHSMQFTIIAEGVENPA 1198
Query: 804 QAEFLGSRDCQNFQGFLYSRPLPPAEF-TTFLR 835
Q FL + C+ QG++ S PLPPA F TTFLR
Sbjct: 1199 QQAFLAAEGCEQMQGYIVSLPLPPALFATTFLR 1231
Score = 38.5 bits (88), Expect = 2e-06
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 13/198 (6%)
Query: 132 SPLDNGPHPLLVVITRDMTAQVAAENALRAAEGKYRAIFENAVE-GIYQSTPDGTYLDVN 190
S +++G P+L + D++ E AL+ +E K+ ++F+ + + DG L+VN
Sbjct: 405 SLIEHGHEPVLRGLMIDISEAKRTEEALQLSEQKFASVFQQCPDILVIARLSDGCLLEVN 464
Query: 191 PALARIYGYASPAELIAHFTDIASQLY-VDGTKRGEFQRLMRETGEVRDFTAEVWRCDGH 249
A G AE + T A ++ + G +R+ +T +R+ R +G
Sbjct: 465 KAFEDQVGL--KAEDVIGKTATALNIWGIPGIGPDLLKRV--QTTSIRNLEMPFLRNNGQ 520
Query: 250 TIWITENARCVRGPDNEVLYYEGTVEDIT----AQRQSQETMRLLGKVFTSIAEGIVL-L 304
+A + E + V DIT Q+Q Q + K F + +G++L
Sbjct: 521 AFTGLISAEPFQLDTTEAIVV--VVRDITQLKETQQQLQTSEEKFAKAFHASPDGLLLSR 578
Query: 305 ERDLTVRTVNPAFEAMTG 322
+RD + VN F +TG
Sbjct: 579 QRDGLLLEVNDGFSRITG 596