Pairwise Alignments

Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 636 a.a., EAL domain-containing protein from Pseudomonas fluorescens SBW25

 Score =  425 bits (1092), Expect = e-123
 Identities = 224/552 (40%), Positives = 332/552 (60%), Gaps = 5/552 (0%)

Query: 281 RQSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDMEGRPARLFASGL 340
           ++++E +R    VF    EG+++ +    +  VN AF  +TG  R+D+ GR   LF SG 
Sbjct: 76  KENRERLRQAAAVFDCTREGVLVTDAQGLIVHVNRAFMEITGYSREDVMGRQPSLFKSGR 135

Query: 341 HENDFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDIT 400
           H ++F   +   ++R G W GEIW  R+ G  Y    T+  +    G+ +HYVA  +DI+
Sbjct: 136 HSSNFYQQMFQSLERCGEWSGEIWNRRKSGEIYPQWQTIRVIHDDLGQVSHYVAVFSDIS 195

Query: 401 KRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQIND 460
             K  E  +   A+ D LT LPNR L  DR +QA+  AQ   R   ++ LDLD FK IND
Sbjct: 196 AIKDSEHELAHLAHHDPLTDLPNRLLFTDRAQQALASAQVHKRGCALLLLDLDHFKIIND 255

Query: 461 SYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSL 520
           S GH+ GD++LKL   RL+       ++ RLGGDEF V+  +       A +A+++L ++
Sbjct: 256 SLGHNVGDQLLKLVGERLKALFGPGVTLARLGGDEFAVLAESCPQVAQAASLAQRMLEAM 315

Query: 521 SEPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDMAR 580
            +PF   G ++F   S+GI+ FP+   +A  LLRNAD A++ AK  G   YA++T ++  
Sbjct: 316 KQPFLFDGHQLFISASIGISLFPNDALSAEQLLRNADSALFKAKSTGREGYALYTEELTA 375

Query: 581 RSLALLTMESDLRHALARDEFELHFQPKVRADLT---LIGAEALIRWRHPEKGLINPGDF 637
            +   + + S+LR AL + E  +++QP    DL    LIG EAL+RW+HP +GL+ PG+F
Sbjct: 376 HAQNRVEIASELRRALEQKELRVYYQPV--HDLNGSRLIGVEALVRWQHPARGLVPPGEF 433

Query: 638 IPLAEESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQFQDQTLVETVRQIL 697
           IP+AE +GLI  I  W + +AC ++  W A+G  +  +++NVS R F  + L E V Q+L
Sbjct: 434 IPIAERTGLIADIDAWVMDQACRQMCDWLAQGAPLSFIAINVSSRLFARRELYEQVAQVL 493

Query: 698 VETGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYSSLNYLKTFPI 757
            +TGL+P  L+LE+TE+ +  D E A+  L  L++LG+ L+IDDFGTGYSSL  LK  P+
Sbjct: 494 HDTGLDPAFLELEVTESAVMDDPEVALEQLHRLRELGLRLAIDDFGTGYSSLLRLKRLPV 553

Query: 758 DTLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQ 817
             LKIDQ FV  +     DAAIV  +IALA+++G  V AEG+E+ EQA FL  + C   Q
Sbjct: 554 QKLKIDQGFVAGLPWDEDDAAIVRVVIALAKSMGMQVHAEGIEQEEQARFLLDQQCDMGQ 613

Query: 818 GFLYSRPLPPAE 829
           G+ + +P+P  E
Sbjct: 614 GYWFGKPMPAQE 625



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 168 AIFENAVEGIYQSTPDGTYLDVNPALARIYGYASPAELIAHFTDIASQLYVDGTKRGEF- 226
           A+F+   EG+  +   G  + VN A   I GY S  +++         L+  G     F 
Sbjct: 87  AVFDCTREGVLVTDAQGLIVHVNRAFMEITGY-SREDVMGR----QPSLFKSGRHSSNFY 141

Query: 227 QRLMRETGEVRDFTAEVW--RCDGHTIWITENARCVRGPDNEVLYYEGTVEDITAQRQSQ 284
           Q++ +      +++ E+W  R  G      +  R +     +V +Y     DI+A + S+
Sbjct: 142 QQMFQSLERCGEWSGEIWNRRKSGEIYPQWQTIRVIHDDLGQVSHYVAVFSDISAIKDSE 201

Query: 285 ETM 287
             +
Sbjct: 202 HEL 204