Pairwise Alignments

Query, 933 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 573 a.a., conserved hypothetical TPR repeat protein from Pseudomonas putida KT2440

 Score = 76.6 bits (187), Expect = 4e-18
 Identities = 127/520 (24%), Positives = 206/520 (39%), Gaps = 41/520 (7%)

Query: 153 GAARLALDKALDIDPADKDALIGAAQIETMAGH--QDAARALLARAAAAAPDDVDVLVAQ 210
           G   LA  KA   +P   +A  G A+   + G   QD   +LL    A   +  D+ +A 
Sbjct: 16  GCQSLAPQKA---EPPVAEAGKGEAEKPVVYGSFKQDTLYSLLVAELAGQRNRFDIALAN 72

Query: 211 -ADTALSANDPAAAEGLFSQAAARLPLNPLIRLSLAQAQIEAGKNAEARQTLNTVLADIP 269
             D A    DPA +E  +  A       P +  +L  A+ +  +N +A++     LA   
Sbjct: 73  YTDQAAKTQDPAVSERAYRIAEYLGADEPSLENALVWARNDP-QNLDAQRAAAIQLARAG 131

Query: 270 AHPWAL-YL------RGLTAYRTNDMTAADKDLTAALALAKTLR----------PAIFLA 312
            +  ++ Y+      +G T +    ++AA+ D +    L  +              IF  
Sbjct: 132 RYDESMTYMEKVLQGQGDTHFDFLALSAAETDQSTRDGLLHSFERLLVKYPDNGQLIFGK 191

Query: 313 GVVKYNIGEYEQASRLLAGLTETEGKSNKTADAVRAAALLKLGRDDESYRLLRPLAAGDG 372
            ++    G+ E+A  LL       G+       +RA  L  L R  E+  LLR     + 
Sbjct: 192 ALLLNQDGKTEEALELLESHPAQNGEVAPIL--LRARLLQALDRGPEALPLLRGAIRDNP 249

Query: 373 ETADLYAMAAVAAQGAAAMADSEGYYQKAVVLRPDDPALLTNLGIVKLARGDTTAGEDTL 432
           +   L    A        +AD++G +   V   PDD  L  +L +V L   D    E  L
Sbjct: 250 DDKRLRLTYARTLVEQDRIADAKGEFISLVQQYPDDDELRYSLALVCLENKDWDEAEGYL 309

Query: 433 NRAAELEGDDKKALLLLFSSLLQKKDFDKAEALAGDTKRKY------PDRAWGWTMDGMI 486
               E +     A L L    + ++  D A AL     R+Y      PD          I
Sbjct: 310 QELVERDSYVDAAHLNL--GRIHEERHDPAGAL-----REYALVGPGPDYLPAQLRQADI 362

Query: 487 QASRGDTAMARAAFETAVRKEPTAGDAVRNLALTALQSGDTEG-ARGVVEGYLRTNAGDS 545
             + G    A      A   +P     +  +   +  + + +  A  V++  ++    D 
Sbjct: 363 LIANGRGTEASRLLADAREAQPDYAIQLFLIESESYSNNNKDAQANQVLQQAIQRYPDDL 422

Query: 546 AMAMIAAAVANKRNDLVAVEKWLRQALERDPANMEAASNLA-SLLTSTSRPQAAIIVAQD 604
            +    A +A KRNDL  +EK LR  + R+P N  A + L  +L   T+R   A  +   
Sbjct: 423 NLLYTRAMLAEKRNDLTQMEKDLRAIITREPENAMALNALGYTLADRTTRYTEAKALIDK 482

Query: 605 ALRISPDTPAVMEALGKAQLLIGDYTAAADVLRRAVAIKP 644
           A +++PD PAV+++LG     +G+  AA   LR+A A  P
Sbjct: 483 AHQLTPDDPAVLDSLGWVNYRLGNLDAAETYLRQAFANFP 522



 Score = 50.4 bits (119), Expect = 3e-10
 Identities = 128/568 (22%), Positives = 213/568 (37%), Gaps = 90/568 (15%)

Query: 356 RDDESYRLLRPLAAGDGETADLYAMAAVAAQGAAAM--ADSEGYYQKAVVLRPDDPALLT 413
           + D  Y LL    AG     D+ A+A    Q A     A SE  Y+ A  L  D+P+L  
Sbjct: 47  KQDTLYSLLVAELAGQRNRFDI-ALANYTDQAAKTQDPAVSERAYRIAEYLGADEPSLEN 105

Query: 414 NLGIVKLARGDTTAGEDTLNRAAELE--GDDKKALLLLFSSLLQKKD--FDKAEALAGDT 469
            L     AR D    +     A +L   G   +++  +   L  + D  FD     A +T
Sbjct: 106 AL---VWARNDPQNLDAQRAAAIQLARAGRYDESMTYMEKVLQGQGDTHFDFLALSAAET 162

Query: 470 KRKYPDRAWGWTMDGMIQASRGDTAMARAAFETAVRKEPTAGDAVRNLALTALQSGDTEG 529
            +         T DG++ +           FE  + K P  G  +   AL   Q G TE 
Sbjct: 163 DQS--------TRDGLLHS-----------FERLLVKYPDNGQLIFGKALLLNQDGKTEE 203

Query: 530 ARGVVEGYLRTNAGDSAMAMIAAAVANKRNDLVAVEKWLRQALERDPANMEAASNLASLL 589
           A  ++E +   N G+ A  ++ A +    +        LR A+  +P +       A  L
Sbjct: 204 ALELLESHPAQN-GEVAPILLRARLLQALDRGPEALPLLRGAIRDNPDDKRLRLTYARTL 262

Query: 590 TSTSRPQAAIIVAQDALRISPDTPAVMEALGKAQLLIGDYTAAADVLRRAVAIKPSGLTY 649
               R   A       ++  PD   +  +L    L   D+  A   L+  V         
Sbjct: 263 VEQDRIADAKGEFISLVQQYPDDDELRYSLALVCLENKDWDEAEGYLQELVERDS----- 317

Query: 650 YLLATAYLNL-------NDPP-RLKEALESVVKLQPDHVDSRVMLATMIVDGGSLSDAKT 701
             +  A+LNL       +DP   L+E   ++V   PD++ +++  A +++  G  ++A  
Sbjct: 318 -YVDAAHLNLGRIHEERHDPAGALREY--ALVGPGPDYLPAQLRQADILIANGRGTEASR 374

Query: 702 AVEGVTTDFPGDPRAQEVRARYLAKAEGPASAITFLEASLTDPNTRPRNLVMLLASAYNE 761
            +            A+E +  Y  +                        L ++ + +Y+ 
Sbjct: 375 LLAD----------AREAQPDYAIQ------------------------LFLIESESYSN 400

Query: 762 KGDGAKASSLLEDWVAKNPDDYPGRLSLATQQIAANQLEKAKTTLEKGLERVPNDWIARN 821
               A+A+ +L+  + + PDD     + A      N L + +  L   + R P + +A N
Sbjct: 401 NNKDAQANQVLQQAIQRYPDDLNLLYTRAMLAEKRNDLTQMEKDLRAIITREPENAMALN 460

Query: 822 ----NLAEVMLRLGQTSAAYDQIVIARRSGGPQPALLDTEGQILLKMGKASEAVEILRLA 877
                LA+   R  +  A  D+   A +     PA+LD+ G +  ++G    A   LR A
Sbjct: 461 ALGYTLADRTTRYTEAKALIDK---AHQLTPDDPAVLDSLGWVNYRLGNLDAAETYLRQA 517

Query: 878 TIDRNAPP-TYGLHLAQALAAAGKKDEA 904
               N P      HL + L A GK+ EA
Sbjct: 518 F--ANFPDHEVAAHLGEVLWANGKRREA 543



 Score = 29.3 bits (64), Expect = 7e-04
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 8/95 (8%)

Query: 155 ARLALDKALDIDPADKDALIGAAQIETMAGHQDAARALLARAAAAAPDDVDVLVAQADTA 214
           A+  +DKA  + P D   L     +    G+ DAA   L +A A  PD    + A     
Sbjct: 476 AKALIDKAHQLTPDDPAVLDSLGWVNYRLGNLDAAETYLRQAFANFPD--HEVAAHLGEV 533

Query: 215 LSANDPAA------AEGLFSQAAARLPLNPLIRLS 243
           L AN          A+G  +QA + +    L+RL+
Sbjct: 534 LWANGKRREARQVWAKGFEAQADSPILRKTLLRLT 568