Pairwise Alignments

Query, 605 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

Subject, 601 a.a., lipid transporter ATP-binding/permease from Pseudomonas simiae WCS417

 Score =  348 bits (893), Expect = e-100
 Identities = 217/602 (36%), Positives = 332/602 (55%), Gaps = 25/602 (4%)

Query: 14  AAGPSTLRLVGRLIKDHLAQQWGLIALAVLCMLAVAASTSAIAWLMKPAVNDV------- 66
           +A PS+L++  RL+  ++    GL AL++L  L  A++   + +++K  V+ +       
Sbjct: 7   SASPSSLKIYFRLLS-YVRPYAGLFALSILGFLIFASTQPMLGYILKYFVDGLSNPEAVL 65

Query: 67  -----FARHDRDVLMLIALAFPVAFVLKGLANYGQRTLMNRVGLRVVQRCREALYDHLQG 121
                F R D  +L  + L   +    +GL ++    L+ +V L +V   R  L+++L  
Sbjct: 66  FPSVPFLR-DLQLLQAVPLLIILIAAWQGLGSFLGNYLLAKVSLGLVHDLRVQLFNNLLT 124

Query: 122 MDIAFFAQQQTAALVSRFTVDLTLLKNTITSGIMVVGRDAVTMVSLVVSLFLLDIELALI 181
           +   +F    +  L+SR T ++T++    T  I VV R+ +T++ L  SL  ++  L L+
Sbjct: 125 LPNRYFDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGMTVIFLFASLLFMNWRLTLV 184

Query: 182 AVTVFPAAVLPIALLGKRVRKAARGMQAQSGQLDALLLQVFQAIRVVKVYNAGEHERARV 241
            + + P   + ++   K+ RK ++ +Q   G +  +  +  Q  RVV+ +    +E  R 
Sbjct: 185 MIAILPLIAVMVSTASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEVYEEKRF 244

Query: 242 AATVDRIYRHLMRSERIGAAISMVVEILSGFAFAAV---VIYGGQRVTAGDLDPGTFFAF 298
                      +R  R GA  +  ++++   A A +   V+Y       GD   G   A+
Sbjct: 245 LKASQSNTNKQLRMTRTGAIYTPALQLVIYTAMAVLMFLVLY-----LRGDASAGDMVAY 299

Query: 299 ITSLFLLYQPIKRIGGVNVVAQEGMAAVERMYGVIDTPPALREGKDAPALVVGGGEIVFD 358
           IT   LL +PI+++  V+   Q+G+A  E ++  +D    +  G      V   G +   
Sbjct: 300 ITLAGLLPKPIRQLSEVSSTIQKGVAGAESIFEQLDEEVEVDRGTIERDKV--SGRLDVR 357

Query: 359 DVRLTYPTQEGPALDGLSFRAPAGATVALVGRSGAGKSTALQLVPRFYDADGGRVLIDGQ 418
           ++  TYP  E   L  +SF A  G  +ALVGRSG+GKST   L+PRFY  + G +L+DG 
Sbjct: 358 NLNFTYPGTERHVLKDISFTAEPGQMIALVGRSGSGKSTLASLIPRFYHHESGEILLDGI 417

Query: 419 DVRAVTFRSLWAAIAMVTQEIILFDDSVRANIAYGR-PGASQAEIEDAARHAAAHDFILA 477
           ++      +L   IA VTQ + LF D+V  NIAYG   GA +AE+E AA  A A DFI  
Sbjct: 418 EIENYKLLNLRKHIAQVTQHVTLFSDTVTNNIAYGDLAGAPRAEVEAAAADANAKDFIDQ 477

Query: 478 LPEGYDTVIGEQGTRLSGGQRQRLVIARAMLKNAPILLLDEATSALDTESERHVRQAFER 537
           LP+G+DT +GE G  LSGGQRQRL IARA+LKNAP+L+LDEATSALDTESERH++ A ++
Sbjct: 478 LPKGFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDK 537

Query: 538 LRQGRTCIVVAHRLSTVMNADIIHVIDAGRIVESGSHAALLAEGGLYADLCATDLSDEPA 597
           + QGRT +V+AHRLST+  AD+I V+D GRIVE G+H  LLA+ G YA L A  L    +
Sbjct: 538 VMQGRTTLVIAHRLSTIEKADLILVMDDGRIVERGTHGELLAQNGYYARLHAMGLDAPVS 597

Query: 598 ED 599
            D
Sbjct: 598 AD 599