Pairwise Alignments

Query, 620 a.a., DNA primase (NCBI) from Rhodospirillum rubrum S1H

Subject, 660 a.a., DNA primase from Pseudomonas putida KT2440

 Score =  323 bits (829), Expect = 1e-92
 Identities = 175/416 (42%), Positives = 252/416 (60%), Gaps = 5/416 (1%)

Query: 3   LPNAFLDELRARLTLSSVVGRRVKLARKGREFLGLCPFHNEKSPSFTVNDEKGFFHCFGC 62
           +P +F+D+L  RL +  VV  RV+L + G+ +   CPFH EK+PSFTV+ +K F++CFGC
Sbjct: 5   IPQSFIDDLINRLDIVDVVSSRVQLKKTGKNYSACCPFHKEKTPSFTVSPDKQFYYCFGC 64

Query: 63  GAHGDVIGFEMRAANIAFREAVERLSAEAGLEMPRETAEDRDRSRQAASHR--EIMEMAC 120
           GA G+ +GF M   N+ F +AVE L+  AG+E+PRE      + RQ        +++ A 
Sbjct: 65  GAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPLLDAAS 124

Query: 121 AFYQKALRL-PEGRGAMEYLRGRGLDDATLARFRLGFSPQG-GALKAALAREGVDEQAMV 178
            FY++ALR  P  + A++YL+GRGL       F LGF+P G   L   L  + + ++ M+
Sbjct: 125 EFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQQKVMI 184

Query: 179 DLGLILRSDDGRPAFDYFRGRVMFPIGDPAGRVVAFGARILGEGQPKYLNSPDTPLFHKG 238
           D GL++ + +    +D FR RVMFPI D  GR++AFG R+LG+ +PKYLNSP+TP+FHKG
Sbjct: 185 DAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVLGDDKPKYLNSPETPVFHKG 244

Query: 239 HSLYNLGPAREAARQSGAIIVAEGYMDVIALARAGLGWAVAPLGTALTEAQMEALWRTIP 298
             LY L  AR+  R    IIV EGYMDVIALA+ GL  AVA LGTA +E  ++ L+R +P
Sbjct: 245 QELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVVP 304

Query: 299 EPVLCFDGDGAGRRAAARAMERALPLIGPGRSLRFALLPGGRDPDDLLR-EGGPVALRQV 357
             + CFDGD AGR+AA RA+E  L  +  GR  RF  LP G DPD L+R EG    + ++
Sbjct: 305 SVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDSLVRAEGTDAFMARI 364

Query: 358 LDVAVPFSEMAWRELSEGQALTTPEQRAALEAAIDAFVAKIADRSLQGHYRQALRD 413
              + P ++  + +L       + E +A +       + KI   +L+   R  L++
Sbjct: 365 NQHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGANLRQLMRNRLKE 420