Pairwise Alignments

Query, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  208 bits (530), Expect = 3e-58
 Identities = 102/254 (40%), Positives = 165/254 (64%), Gaps = 3/254 (1%)

Query: 429 EIAERSLLPIPEFRRIVSTVQKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLI 488
           EI    LL   E        QKG+      +K MIE+NLRLV+ IA++Y NRGL  LDLI
Sbjct: 70  EIGFSPLLSPEEEVHFARLSQKGD---PAGRKRMIESNLRLVVKIARRYVNRGLSLLDLI 126

Query: 489 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVR 548
           +EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N  +R
Sbjct: 127 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLR 186

Query: 549 TSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIED 608
            +R++  ++  EP+PEE+A  L+ P+ +V+++L + +   S++  +G + D  L D + D
Sbjct: 187 AARELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTD 246

Query: 609 KNAVQPLDAAINSNLRETCTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRE 668
                P +   + +L ++  + L  LT ++  V+  RFG+  +   TLE+VG +  +TRE
Sbjct: 247 DRPTDPCELLQDDDLSQSIDQWLGELTDKQREVVVRRFGLRGHESSTLEDVGLEIGLTRE 306

Query: 669 RIRQIEAKALRKLK 682
           R+RQI+ + L++L+
Sbjct: 307 RVRQIQVEGLKRLR 320



 Score = 29.3 bits (64), Expect = 3e-04
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 113 DIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIE----AGREMMI 154
           D  R  D  ++YL E+G   LLS E E+  A+  +    AGR+ MI
Sbjct: 56  DYSRALDATQLYLNEIGFSPLLSPEEEVHFARLSQKGDPAGRKRMI 101