Pairwise Alignments

Query, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score =  541 bits (1394), Expect = e-158
 Identities = 332/667 (49%), Positives = 414/667 (62%), Gaps = 64/667 (9%)

Query: 31  VKKLVNRGKDRGYITYDELNNALPPDDVSSEQIEDTMAMLSDMGINVVEDEEEGEASAAP 90
           +K+L+ RG+++GY+TY E+N+ LP D    EQ+ED + M++DMGINV E   + +A    
Sbjct: 11  IKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFESAPDADALLLA 70

Query: 91  PAEAGEEEPGREVAATGNVSEDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGR 150
            A+  +E    E AA     E DIGRT DPVRMY+REMG+VELL+REGEI IAKRIE G 
Sbjct: 71  EADT-DEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGI 129

Query: 151 EMMIGGICESPLTIRALLQWHDALVDGRMLLRDIIDLDATYGSGAGPDVVAEGLEDSVVP 210
             ++G I   P T+  +L  +D +      L D++      G     D +A   E+  +P
Sbjct: 130 REVMGAIAHFPGTVDYILGEYDRVTTEGGRLSDVLS-----GYIDPDDNIAAPTEEVPIP 184

Query: 211 LSPLALSPARALPKEADEAEEAVTPGRDDDSEDEDEGDDAKPADGAGDEEAAPSGEDEGD 270
            +           K A   EE+     DDD E+ + GDD         EE A SG D   
Sbjct: 185 GA-----------KAAAAKEES-----DDDEEESESGDD---------EEEAESGPDP-- 217

Query: 271 GSENNVSLAAMEQELMPRVLETFEHIATTYGKLKKAQDQRIAALQKGEEPGAALERKYDK 330
                  +AA     +   L+    +    G+  K   + I ALQ               
Sbjct: 218 ------VVAAQRFGAVSDQLQATSKVLKKNGRNHK---ESIEALQA-------------- 254

Query: 331 LKLELVGLMEDVHLNNARIEQLVEQL-NALNKGLITQEGKLLRLAER-AKIRRDEFLDHY 388
               L  L   + L   + E LVE++ +ALN+ L  QE  +++L  R A++ R +FL  +
Sbjct: 255 ----LADLFMPIKLVPKQFEVLVERVRDALNR-LRQQERAIMQLCVRDARMPRADFLRMF 309

Query: 389 FGREMDPSWREDVAALPGKGWRDFTTRFADEIKDIRGSIAEIAERSLLPIPEFRRIVSTV 448
              E D +W  D+A    K W          I   +  + ++   + L + E + I   +
Sbjct: 310 PSNETDQTWSGDLAKRNTK-WAAALGEKNAAIVACQQKLIDLETETGLTVAEIKEINRRM 368

Query: 449 QKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 508
             GE +A RAKKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY
Sbjct: 369 SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 428

Query: 509 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAE 568
           KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL R SRQML E+GREPTPEEL E
Sbjct: 429 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGE 488

Query: 569 KLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAINSNLRETCT 628
           +++MP +K+RKVLKIAKEPIS+ETPIGD+EDSHLGDFIED     P+D A   +L+E   
Sbjct: 489 RMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATR 548

Query: 629 RVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSR 688
            VL+ LT RE +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HP+RS 
Sbjct: 549 DVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSE 608

Query: 689 KLRSFLD 695
            LRSFLD
Sbjct: 609 HLRSFLD 615