Pairwise Alignments

Query, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

Subject, 660 a.a., RNA polymerase, sigma 70 subunit, RpoD from Enterobacter asburiae PDN3

 Score =  540 bits (1391), Expect = e-158
 Identities = 337/698 (48%), Positives = 422/698 (60%), Gaps = 63/698 (9%)

Query: 1   MATKATNTAEAVNTQEEGGDSPLLDSMNAAVKKLVNRGKDRGYITYDELNNALPPDDVSS 60
           +A K  +     N   + G   +  +  + +K LV RGK++GY+TY E+N+ LP D V S
Sbjct: 24  LALKVGSPIADTNQTNKCGYRLMEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDS 83

Query: 61  EQIEDTMAMLSDMGINVVEDEEEGEASAAPPAEAGEEEPGREVAATGNVS-EDDIGRTDD 119
           +QIED + M++DMGI V+E+  + +           +E   E AA    S E +IGRT D
Sbjct: 84  DQIEDIIQMINDMGIQVMEEAPDADDLLLAETSNNTDEDAEEAAAQVLSSVESEIGRTTD 143

Query: 120 PVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTIRALLQWHDALVDGRM 179
           PVRMY+REMG+VELL+REGEI IAKRIE G   +   + E P  I  LL+ +D +     
Sbjct: 144 PVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEA 203

Query: 180 LLRDIIDLDATYGSGAGPDVVAEGLEDSVVPLSPLALSPARALPKEADEAEEAVTPGRDD 239
            L D+I            D  AE  ED    ++P A      L +E  +         DD
Sbjct: 204 RLSDLIT--------GFVDPNAE--ED----MAPTATHVGSELSQEEMD---------DD 240

Query: 240 DSEDEDEGDDAKPADGAGDEEAAPSGEDEGDGSENNVSLAAMEQELMPRVLETFEHIATT 299
           + EDE+E DD    D A D+                    +++ EL     E F  + T 
Sbjct: 241 EDEDEEESDD----DTADDDN-------------------SIDPEL---AREKFAELRTQ 274

Query: 300 YGKLKKAQDQRIAALQKGEEPGAALERKYDKLKLELVGLMEDVHLNNARIEQLVEQLNAL 359
           Y      +  R     KG    AA E       L+L  + +   L   + + LV  +  +
Sbjct: 275 Y------EVTRDTIKAKGRSHAAAQEE-----ILKLSEVFKQFRLVPKQFDYLVNSMRVM 323

Query: 360 NKGLITQEGKLLRL-AERAKIRRDEFLDHYFGREMDPSWREDVAALPGKGWRDFTTRFAD 418
              + TQE  +++L  E+ K+ +  F+  + G E   +W     A+  K W +      D
Sbjct: 324 MDRVRTQERIIMKLCVEQCKMPKKNFITLFTGNETSETWFNAAIAM-NKPWSEKLHDVKD 382

Query: 419 EIKDIRGSIAEIAERSLLPIPEFRRIVSTVQKGEREASRAKKEMIEANLRLVISIAKKYT 478
           ++      + +I E + L I + + I   +  GE +A RAKKEM+EANLRLVISIAKKYT
Sbjct: 383 DVHRGLQKLHQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYT 442

Query: 479 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 538
           NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
Sbjct: 443 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH 502

Query: 539 MIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEE 598
           MIETINKL R SRQML E+GREPTPEELAE++ MP +K+RKVLKIAKEPIS+ETPIGD+E
Sbjct: 503 MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDE 562

Query: 599 DSHLGDFIEDKNAVQPLDAAINSNLRETCTRVLASLTPREERVLRMRFGIGMNTDHTLEE 658
           DSHLGDFIED     PLD+A   +LR     VLA LT RE +VLRMRFGI MNTDHTLEE
Sbjct: 563 DSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEE 622

Query: 659 VGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN 696
           VG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD+
Sbjct: 623 VGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 660