Pairwise Alignments

Query, 585 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 640 a.a., Photosystem I assembly protein Ycf3 from Azospirillum sp. SherDot2

 Score =  209 bits (532), Expect = 3e-58
 Identities = 177/545 (32%), Positives = 234/545 (42%), Gaps = 54/545 (9%)

Query: 49  GDGALALAAFTRGLAVAADDAPLRIERAGLLLDLGRAEEALADLAVALALAPDHQAVLST 108
           GD A AL      L  A     L +  + LL   GR  +A A    A+AL P        
Sbjct: 134 GDNAPALLERFCRLRPATASELLAVADSRLLA--GRLADARAAYRAAVALEPATVQAYVN 191

Query: 109 QGRALIDLGRPGEALAPLRRARALAPDDVAPAHNLGRALLALDRPDEALPLLEAAVARAP 168
            G          +A A  RRA  L+PD     +NL  A+  L+    A+     +VA  P
Sbjct: 192 LGATASREKNHAQAAAAYRRALRLSPDHPGAWNNLASAVWELNDGQGAVRFCRRSVALKP 251

Query: 169 GAIDPRADLAEALRRLDRPGDAAQLLRAVLADAPGRADLADALAGALLAAGAVDESVAVL 228
              DP A+L    R   R GD                D A+A                + 
Sbjct: 252 DHPDPYANLGYVQRSQARNGD----------------DFAEA--------------ATLC 281

Query: 229 RASLDKAPTHGAGWVNLAAALIETGALDEATAAADRALALDPDDADAKVNRAFARCLADD 288
           R +L   P+H +   NL    ++ G LDEA    +R LA +P   DA+ N + A   A  
Sbjct: 282 RRALRVNPSHVSALNNLGIVNLDLGQLDEAERLFNRTLAAEPKHPDARFNLSLALLKAGR 341

Query: 289 YEQGFADYAHRWRTAAFQRPYPPVTAPPWAGEPLGEGTLLVRGEQGLGDQIMAARFLPWL 348
            ++G+  Y  RW T   Q P        W GEPL   T+L+  EQG GD +   R+ P +
Sbjct: 342 LKEGWDHYEARWETG--QLPTVNGQLRAWQGEPLNGATILLHAEQGHGDTLHFVRYAPLV 399

Query: 349 SKRPDRPRRIVFECHPCLHRLLAEGLEAGIDLLAMGRPPPPVAAWIGALDLARMAGVTAG 408
           + +  R   +V    P L RL+A G+     + A+  P P        + L R+ G   G
Sbjct: 400 AAQGGR---VVLAVQPSLKRLVA-GMPGVAAVHALTDPFPKPEFHCPLMSLPRLLGTELG 455

Query: 409 VMPVDVPYLKARPPVPP----LAPPLPPGGRGRLGLVWAGKTRP---------RDRSCPL 455
            +P  +PYL   PP       L  PLP  G  R+GLVW+G  RP         R RS  L
Sbjct: 456 TIPGAIPYLY--PPAEAIGKWLGQPLPGAGL-RVGLVWSGDPRPGLLRANLTDRRRSMSL 512

Query: 456 EPLAGLCVDQGWTVHALQLGPRRADLAGLPAGLGVIDEGDRLGDMAATASVMAGLDLVVA 515
             LA L          LQ+G   A L   PAG+ + D    + D A TA+++  LDLV+ 
Sbjct: 513 HDLAPLAEVPDLRFVNLQMGGPAAQLTEPPAGMDIHDPMGAITDFADTAALVMRLDLVIT 572

Query: 516 VDTAVAHLAGALGLPCALLLLATPDWRWGQKASRTVWYPSLRLFRQPHPGDWDGAFDAVR 575
           VDT+VAHL GALG P  ++      WRW Q    T WYP++RLFRQ  PGDW      V 
Sbjct: 573 VDTSVAHLVGALGKPVWVMSRYDGCWRWLQDRDDTPWYPTMRLFRQTAPGDWTTVIRRVA 632

Query: 576 RAFAQ 580
            A  Q
Sbjct: 633 DALRQ 637



 Score = 61.2 bits (147), Expect = 1e-13
 Identities = 70/233 (30%), Positives = 91/233 (39%), Gaps = 6/233 (2%)

Query: 51  GALALAAFTRGLAVAADDAPLRIERAGLLLDLGRAEEALADLAVALALAPDHQAVLSTQG 110
           G LA     +G A    D    +  A      G A       A+ L+  P H  VL   G
Sbjct: 2   GQLAKPEVGKGPAATLPDVRSMLASAVARHKAGDAAAGTLYRAI-LSAEPSHGDVLHLLG 60

Query: 111 RALIDLGRPGEALAPLRRARALAPDDVAPAHNLGRALLALDRPDEALPLLEAAVARAPGA 170
              +  G    A   LRRA  +        ++LG A  AL RPD+A      A+   P  
Sbjct: 61  VTALQAGAAEAASRWLRRALVVDRAQAYYRNSLGEAFRALGRPDKAREQYRLALTLNPAY 120

Query: 171 IDPRADLAEALRRLDRPGD-AAQLLRAVLADAPGRADLADALAGALLAAGAVDESVAVLR 229
            +  A+    L R   PGD A  LL       P  A    A+A + L AG + ++ A  R
Sbjct: 121 PESLAN----LHRQPLPGDNAPALLERFCRLRPATASELLAVADSRLLAGRLADARAAYR 176

Query: 230 ASLDKAPTHGAGWVNLAAALIETGALDEATAAADRALALDPDDADAKVNRAFA 282
           A++   P     +VNL A         +A AA  RAL L PD   A  N A A
Sbjct: 177 AAVALEPATVQAYVNLGATASREKNHAQAAAAYRRALRLSPDHPGAWNNLASA 229