Pairwise Alignments
Query, 511 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H
Subject, 542 a.a., Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) from Variovorax sp. SCN45
Score = 275 bits (703), Expect = 3e-78
Identities = 175/488 (35%), Positives = 272/488 (55%), Gaps = 21/488 (4%)
Query: 5 EPALRLRAITKRFGALLANDAISLDLAKGEILALLGENGAGKTTLMNILFGHYLADSGSI 64
+P L L + K + A + +D +SL L GE+LAL GENGAGK+TL I+ G G +
Sbjct: 7 QPVLSLSTMGKDYAAPVLDD-VSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQM 65
Query: 65 EVFGKPLTAASPRAAIAAGLGMVHQHFTLAENLSVLENVLIGTEPL---WLPRLGRAKAR 121
+ G+P S R A G+ MV Q L LSV EN+L+ P W+ R +
Sbjct: 66 LLDGQPFAPGSRRDAERLGVRMVMQELGLVTTLSVAENLLLDRLPSKTGWIRRGKLNELA 125
Query: 122 ARLLALGRRFGLE-VNPDAAVAALSVGERQRVEILKALYRDARILILDEPTAVLTPQESE 180
AR LA + G++ ++P VA L +G++Q VEI + L D R+L+LDEPTA+LTP+E+
Sbjct: 126 ARQLA---KIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETS 182
Query: 181 ALFSTLRTMVGDGLSVIFISHKLNEVAAVSSRVAVLRGGKLVAERPTAGMNRAALAELMV 240
LF + + G++++++SH+L E+ ++ RVAVLR G+LV R AG+ + L + MV
Sbjct: 183 HLFEQIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQRMV 242
Query: 241 GRPVADPVRRPLPPGPPALALRAITVNGPGIRAPLRDVSLTVHRHEIVGIAGVSGNGQAT 300
GR V + R P L ++ G G +RDV + + E++G+AG+ G+G+
Sbjct: 243 GRAVHEHEGRERRTAGPVL----LSARGIGRAQVVRDVDIDLRAGEVMGLAGLVGSGRTE 298
Query: 301 LAALISGLVAPTSGQFRLF-GQEPAR------HRPTQMITLGVGRIPEDRHAEGLVGDLA 353
L L+ G G+ L+ +P + P Q I G+G + EDR ++GL+ +
Sbjct: 299 LVRLLFGADRADRGEITLYENDQPVQQARKGWRSPMQAIRAGIGLVTEDRKSQGLLLTQS 358
Query: 354 IWENLIAEQYRDKAFQRAGFVKRKAARAHARALIADFDVRCSSPDATTRLLSGGNMQKLI 413
I N A RAG+++R R A+ L+ +R S + LSGGN QK++
Sbjct: 359 IRVNATLSDL--GAISRAGWLQRAKERGIAQKLVELLRIRSRSIEQPVATLSGGNQQKVV 416
Query: 414 LGRTLTRDPGLILANQPNRGLDIGAVAFVHDRLLRAREKGAAIVLISEDLDEILALSDRI 473
R L R+ ++L ++P RG+D+GA A ++ L R + G A++++S DL E++A+ DRI
Sbjct: 417 FARWLHRECKVLLLDEPTRGVDVGARADLYAELDRMTDAGKALLMVSSDLRELMAMCDRI 476
Query: 474 AVIHAGRL 481
V+ AGRL
Sbjct: 477 GVMSAGRL 484
Score = 94.0 bits (232), Expect = 1e-23
Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 8/245 (3%)
Query: 263 AITVNGPGIRAP-LRDVSLTVHRHEIVGIAGVSGNGQATLAALISGLVAPTSGQFRLFGQ 321
+++ G AP L DVSL ++ E++ + G +G G++TL+ ++ GLV PT GQ L GQ
Sbjct: 11 SLSTMGKDYAAPVLDDVSLVLNAGEVLALTGENGAGKSTLSKIVCGLVQPTRGQMLLDGQ 70
Query: 322 EPARHRPTQMITLGVGRIPEDRHAEGLVGDLAIWENLIAEQYRDKAFQRAGFVKRKAARA 381
A LGV + ++ GLV L++ ENL+ ++ K G+++R
Sbjct: 71 PFAPGSRRDAERLGVRMVMQEL---GLVTTLSVAENLLLDRLPSKT----GWIRRGKLNE 123
Query: 382 HARALIADFDVRCSSPDATTRLLSGGNMQKLILGRTLTRDPGLILANQPNRGLDIGAVAF 441
A +A ++ P L G Q + + R L D +++ ++P L +
Sbjct: 124 LAARQLAKIGMQNIDPATPVARLGIGQQQMVEIARNLQDDTRVLVLDEPTAMLTPRETSH 183
Query: 442 VHDRLLRAREKGAAIVLISEDLDEILALSDRIAVIHAGRLSPPVARESVTIGQLGVMMAG 501
+ +++ + +G AIV +S L+E+ ++DR+AV+ GRL A V +L M G
Sbjct: 184 LFEQIELLKARGVAIVYVSHRLEELQRIADRVAVLRDGRLVDVRAMAGVRESELVQRMVG 243
Query: 502 DGPQE 506
E
Sbjct: 244 RAVHE 248
Score = 91.7 bits (226), Expect = 6e-23
Identities = 78/256 (30%), Positives = 126/256 (49%), Gaps = 27/256 (10%)
Query: 26 ISLDLAKGEILALLGENGAGKTTLMNILFGHYLADSGSIEVF--GKPLTAA-----SPRA 78
+ +DL GE++ L G G+G+T L+ +LFG AD G I ++ +P+ A SP
Sbjct: 276 VDIDLRAGEVMGLAGLVGSGRTELVRLLFGADRADRGEITLYENDQPVQQARKGWRSPMQ 335
Query: 79 AIAAGLGMV-----HQHFTLAENLSV---LENVLIGTEPLWLPRLGRAKARARLLALGRR 130
AI AG+G+V Q L +++ V L ++ + WL R +L+ L R
Sbjct: 336 AIRAGIGLVTEDRKSQGLLLTQSIRVNATLSDLGAISRAGWLQRAKERGIAQKLVELLRI 395
Query: 131 FGLEVNPDAAVAALSVGERQRVEILKALYRDARILILDEPTAVLTPQESEALFSTLRTMV 190
+ + VA LS G +Q+V + L+R+ ++L+LDEPT + L++ L M
Sbjct: 396 RSRSI--EQPVATLSGGNQQKVVFARWLHRECKVLLLDEPTRGVDVGARADLYAELDRMT 453
Query: 191 GDGLSVIFISHKLNEVAAVSSRVAVLRGGKLVA-----ERPTAGMNRAALAELMVGRPVA 245
G +++ +S L E+ A+ R+ V+ G+LVA E + AA ++ GR A
Sbjct: 454 DAGKALLMVSSDLRELMAMCDRIGVMSAGRLVAVFERGEWTEQSLLAAAFSD-ATGRAAA 512
Query: 246 DPVRRP---LPPGPPA 258
P P + P PPA
Sbjct: 513 -PTLAPAASVAPAPPA 527