Pairwise Alignments

Query, 820 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  236 bits (602), Expect = 3e-66
 Identities = 182/543 (33%), Positives = 273/543 (50%), Gaps = 35/543 (6%)

Query: 267 DDKGSIESINGAAERVLGLTRDEAVGRPLGDLIPLDRLAEDGGEEGA----LSRRLLALR 322
           D +G+I  +N     + G +R+E +G          R+   G  E      + R L+A R
Sbjct: 19  DLRGNITYVNQQFCSISGYSREELLGAN-------HRILNSGLHEPTFFVGMWRALVAGR 71

Query: 323 GREIDLPARRADGAAFHLS---LKLSDFMLGERRYFNALIADVTDRKAMIDRLTFLAQRD 379
             + ++  R  DG+ + +    + L D + G+ R + ++  DVT+++ ++  L +    D
Sbjct: 72  VWKGEICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTLQWRVGHD 131

Query: 380 PLTGLINRRSFFDDLEKAVARAGRFPAAGVAVISIDLDRFKYVNDSLGHQAGDCLLKEVA 439
            LTGL NR    D L +A+A + R     +AV  +DLD FK VND  GH  GD LL EVA
Sbjct: 132 VLTGLPNRAYLSDLLNQALAYS-RCEGISLAVCMLDLDGFKAVNDGYGHAVGDLLLVEVA 190

Query: 440 EVLFGRLRETDLLARLGGDEFAVLLHGVNREGALHVA--EALRLCLADYAFSYDGKSVEI 497
           + L   LR  D +ARL GDEF ++L  V+ E  LH A    LR   A         ++ +
Sbjct: 191 QRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAAPCVVREH--TLSL 248

Query: 498 GCSLGVATWAADVDDPEDLLARADMAMRLAKRAGRNRVHLFE---EGDLEVRARVVADAG 554
             S+GV  +  D +D + L+  AD AM +AK+ GRNR HLF+   E +L+   + VA   
Sbjct: 249 SASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQELKATHQTVAR-- 306

Query: 555 YSKLIDRGLRNNLFRPVFQPIIDVTSGAVVGHETLARLHDPAAIGLTMDVLIPVAERFGL 614
               + R LRN      +QP +++ +G V+G E L R   P    +     +P  E+  L
Sbjct: 307 ----VRRALRNGELCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWVEQTDL 362

Query: 615 AVEIDRQIILAVTEALAEDAGWLEGG---FLSFNLSAQSVGDGRIFSAVRRLIATR-RLP 670
            VEI   +I    +AL++   W   G    LS N++A+ +        +++L+A    + 
Sbjct: 363 IVEIGEWVI---GQALSQLQAWQRQGQPWSLSVNIAARHLQRSDFAERLQQLLAAYPAVD 419

Query: 671 PQALIFEITETAAIASLAAARTFLKALTDLGCKTALDDFGSGYSSFTYLRELPVDFLKID 730
           P  L  EI E+ AI +L      L A   LG + +LDDFG+GYSS +YL+ LP   +KID
Sbjct: 420 PALLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQTIKID 479

Query: 731 GRYVRDIHHDPVKAAMVQAINTVAHAMGMRTIAECVEEASGLEVLRQSGVDCAQGFLFGR 790
             +VRDI HD    A+ +A+  +A A G   IAE +E      VL   G + AQG+   R
Sbjct: 480 QSFVRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGYCIAR 539

Query: 791 PAP 793
           P P
Sbjct: 540 PMP 542