Pairwise Alignments

Query, 820 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  237 bits (604), Expect = 4e-66
 Identities = 179/556 (32%), Positives = 271/556 (48%), Gaps = 32/556 (5%)

Query: 254  SVLESTSDGIITVDDKGSIESINGAAERVLGLTRDEAVGRPLGDLIPLDRLAEDGGEEGA 313
            +V E ++  I+  D  G I   N A  RV G    E +     D +P   L  D  +EG 
Sbjct: 720  TVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVL-----DQLP-GMLTVDEQQEGH 773

Query: 314  LSRRLLALRGR---EIDLPARRADGAAFHLSLKLSDFM--LGERRYFNALIADVTDRKAM 368
            L   +  L  R   E ++  +R DG  +   + ++  +   G+   +     D+++RKA 
Sbjct: 774  LRYVVKQLHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFFTDISERKAS 833

Query: 369  IDRLTFLAQRDPLTGLINRRSFFDDLEKAVARAGRFPAAGVAVISIDLDRFKYVNDSLGH 428
              R+  LA  D LT L NR  F D L  A+ +A R   A V ++ +DLDRFK +NDSLGH
Sbjct: 834  EQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAER-QKAWVVLMFLDLDRFKPINDSLGH 892

Query: 429  QAGDCLLKEVAEVLFGRLRETDLLARLGGDEFAVLLH-------GVNREGALHVAEALRL 481
             AGD +LK++A  L   + + D +AR+GGDEF +LL         +NR  A+HVAE +  
Sbjct: 893  AAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNR--AIHVAENILG 950

Query: 482  CLADYAFSYDGKSVEIGCSLGVATWAADVDDPEDLLARADMAMRLAKRAGRNRVHLFEEG 541
             L    F  + +   +  S+G+A    D  +   L+  AD AM  AK  G+N    ++  
Sbjct: 951  SLVR-PFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFYQA- 1008

Query: 542  DLEVRARVVADAGYSKLIDRGLRNNLFRPVFQPIIDVTSGAVVGHETLARLHDPAAIGLT 601
              E+ A  +        +   +  N F   +QP        + G E L R   P    + 
Sbjct: 1009 --EMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVP 1066

Query: 602  MDVLIPVAERFGLAVEIDRQIILAVTEALAEDAGWLEGGF----LSFNLSAQSVGDGRIF 657
                IPV E  GL V++   ++    EA  +   W +       +S N+SA+   DG++ 
Sbjct: 1067 PGDFIPVIEELGLVVDVGDWVL---REASRQLKAWHKAKVRVPKVSVNISARQFSDGQLG 1123

Query: 658  SAVRRLIATRRLPPQALIFEITETAAIASLAAARTFLKALTDLGCKTALDDFGSGYSSFT 717
            + +  ++    LPP  L  E+TE+  +  +  A   L +L +LG   A+DDFG+GYSS  
Sbjct: 1124 TRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSLN 1183

Query: 718  YLRELPVDFLKIDGRYVRDIHHDPVKAAMVQAINTVAHAMGMRTIAECVEEASGLEVLRQ 777
            YL++ P+D LKID  +V  +      A + +AI  +AH++ +  IAE VE    LE LR+
Sbjct: 1184 YLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLRE 1243

Query: 778  SGVDCAQGFLFGRPAP 793
             G D  QG+LFGRP P
Sbjct: 1244 HGCDEVQGYLFGRPMP 1259