Pairwise Alignments

Query, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

Subject, 659 a.a., DNA topoisomerase IV subunit B (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  771 bits (1991), Expect = 0.0
 Identities = 399/657 (60%), Positives = 488/657 (74%), Gaps = 13/657 (1%)

Query: 3   DLFQDAAAAQPADAYTARSIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEILDNAMDEA 62
           DLF  A +   +  Y A +IEVLEGLEPVRRRPGMYIGG DERA HHL +E+LDN+MDEA
Sbjct: 4   DLFASAQSTT-SPGYDASTIEVLEGLEPVRRRPGMYIGGIDERAFHHLASEVLDNSMDEA 62

Query: 63  VAGYAQVIDIDLAVDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYK 122
           VAG+A  I+I L     + + DNGRGIP+D HP+FP KSALEVILTTLHSGGKF G AY 
Sbjct: 63  VAGHATRIEISLEPGNKLTITDNGRGIPVDDHPKFPGKSALEVILTTLHSGGKFEGKAYA 122

Query: 123 VSGGLHGVGISVVNALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRRGTQVRF 182
            SGGLHGVGISVVNALS    +EVAR++ L+ Q F +G P   L+K+G APNRRGT V F
Sbjct: 123 TSGGLHGVGISVVNALSIKTVIEVARNKELFRQSFSQGLPTSGLEKVGAAPNRRGTAVSF 182

Query: 183 HPDAEIFGPRARFKPALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNG 242
            PD+EIFG + +FKPA L+R+ARSKAYLF GV IRW CAPEL+ DD   P E VF FP G
Sbjct: 183 IPDSEIFGEQ-KFKPAKLYRLARSKAYLFAGVEIRWKCAPELIGDD--TPPEAVFQFPGG 239

Query: 243 LGDYLGHALANRPLVGGRTFAGTANLPDDMGTVEWALCWPEDDEPFFNSYVNTIPTPEGG 302
           L D+L   L +R     + F+G  + P + G VEWA+ WP   +  ++ Y NTIPTP+GG
Sbjct: 240 LADHLKEQLGDRECATTQFFSGNQDFPGEAGRVEWAVAWPLWSDGSYSWYCNTIPTPDGG 299

Query: 303 THEAGLRNALTRGLRSFAEMSGNKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKL 362
           THE GLR AL +G+R+F E+ G KK A  +TA+D++  + +M S+F+RDPQFQ QTK++L
Sbjct: 300 THENGLRAALVKGIRAFGELVGQKK-AKDITADDIMTSSEIMLSVFIRDPQFQSQTKDRL 358

Query: 363 ASQEATRLVEQALRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKETSRKTAT--K 420
            S +A RLVE A+RD FDH+LT   D    LL + ++R DERL+R+Q KE  RKTAT  +
Sbjct: 359 TSPDAARLVENAVRDHFDHFLTDHMDRGKALLAYVIDRMDERLKRKQEKEVKRKTATSAR 418

Query: 421 KLRLPGKLSDCTRSTRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLD 480
           KLRLPGKL+DC+    +G E+FLVEGDSAGGSAKQARDR+TQA+LPLRGKILNVASA+  
Sbjct: 419 KLRLPGKLTDCSNDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTA 478

Query: 481 KLRGNQELSDLAEALGCGTRGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPA 540
           K+  NQE++D+  ALGCGTR   + ++LRY+++VIMTDADVDGAHIA+LLMTFFF+EMP 
Sbjct: 479 KILANQEIADMILALGCGTRKDCNPDNLRYERIVIMTDADVDGAHIATLLMTFFFQEMPE 538

Query: 541 LVSAGHLYLAMPPLYRLTQGGTSVYARDDAHKDQLMKTVFKTKGKVEISRFKGLGEMPPA 600
           LV  GHLYLA PPLYRLT GG S+YA DDA ++ ++   FK K KVEISRFKGLGEM P 
Sbjct: 539 LVRRGHLYLAQPPLYRLTAGGKSLYAMDDAQREAMLAKEFKGK-KVEISRFKGLGEMNPM 597

Query: 601 QLRETTMAYATRQLLRVTVPGGKTEEDREDARETAKLVEELMGRKPELRFRFIQENA 657
           QLRETTM   TR L+R+T+P     +D ED ++   LVE LMG  P  RF FIQENA
Sbjct: 598 QLRETTMDPKTRSLIRITLP-----DDIEDRQQVRDLVERLMGTNPAHRFAFIQENA 649