Pairwise Alignments

Query, 1393 a.a., DNA-directed RNA polymerase, beta subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 1391 a.a., DNA-directed RNA polymerase subunit beta from Magnetospirillum magneticum AMB-1

 Score = 2221 bits (5754), Expect = 0.0
 Identities = 1111/1393 (79%), Positives = 1238/1393 (88%), Gaps = 2/1393 (0%)

Query: 1    MTKSLTSRKRIRKDFGRIPTVAPMPNLIEVQKSSYDQFLQIGVPVDKRTDSGLQEVFKSV 60
            M KS T RKR+RK FGRIPTVAPMPNLIEVQKSSYD FLQ+    ++R + GLQEVFKSV
Sbjct: 1    MAKSYTGRKRVRKSFGRIPTVAPMPNLIEVQKSSYDHFLQMDTAPEQRGNVGLQEVFKSV 60

Query: 61   FPIRDFSGKGELEFVAYELEEPKYDTDECQQRGMTFAAPLKVTLRLLVWDVDEETGARSI 120
            FPI+DFS +G LEFV YELE+PKYD +ECQQRGMTFAAPLKVTLRL+VWD+DE+TG+RSI
Sbjct: 61   FPIKDFSERGTLEFVRYELEQPKYDVEECQQRGMTFAAPLKVTLRLVVWDIDEDTGSRSI 120

Query: 121  RDIKEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAA 180
            RDIKEQDVYMGDMPLMTSNGTF+INGTERVIVSQMHRSPGVFFDHDKGKTHSSGK+LFAA
Sbjct: 121  RDIKEQDVYMGDMPLMTSNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAA 180

Query: 181  RVIPYRGSWLDFEFDAKDMVYVRIDRRRKLPVTTLLYALEGAAATALREARTAEGRSVDP 240
            RVIPYRGSWLDFEFDAKD+VYVRIDRRRKLPVTTLLYAL+G    ALR  R AEGR ++ 
Sbjct: 181  RVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPVTTLLYALDGMNTAALRAQRAAEGRGLEQ 240

Query: 241  SEIAGMTSEEILDFFYQKLSYKRDDKGWKVDFKPDHLRGVKLMFDLVDAATGEVKIEAGT 300
            SEI GMTSEEIL +FY K+ Y R  KGWK  F  + L+GVKL+ DL+DA +GE   +AG+
Sbjct: 241  SEIKGMTSEEILSYFYGKVVYTRGPKGWKTPFDAERLKGVKLVSDLIDAKSGEKVADAGS 300

Query: 301  KVTPRAARKLAEDGMTEMRVFTEELVGRYAAEDMINEASGEIYAEAGEELTEAMLADMEK 360
            K+TPR  +KL E G+T++ VF E+++G+Y AED+INE +GEI+ EAG+ELT  ++A++EK
Sbjct: 301  KMTPRLGKKLREAGLTDIVVFPEDMIGQYVAEDIINEQTGEIFTEAGDELTANLVAELEK 360

Query: 361  AGFTELRVLHIDHVNVGPYVRNTLAMDKNTTREEALIDIYRVMRPGEPPTLETADALFKG 420
            AG +EL VL IDH+NVGPY+RNTLA+DKN++REEALIDIYRVMRPGEPPTLETA+ALF G
Sbjct: 361  AGISELPVLAIDHINVGPYMRNTLAIDKNSSREEALIDIYRVMRPGEPPTLETAEALFTG 420

Query: 421  LFFDSERYDLSAVGRVKMNARLGFTMQEAPDTMRVLRKEDVLHIIRQLVELKDGKGEIDD 480
            LFFDSERYDLSAVGRVKMN+RL     E  DT+RVLRKED+L +I+ LVELKDGKGEIDD
Sbjct: 421  LFFDSERYDLSAVGRVKMNSRLN--TPEVADTVRVLRKEDILGVIKVLVELKDGKGEIDD 478

Query: 481  IDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDTVMPHDLINAKPAAAAVRE 540
            IDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDID+VMPHDLINAKPAAAAVRE
Sbjct: 479  IDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDSVMPHDLINAKPAAAAVRE 538

Query: 541  FFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP 600
            FFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP
Sbjct: 539  FFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP 598

Query: 601  EGPNIGLINSLATFARVNQYGFIESPYRKVVEGTVTDEVTYMSAMEEGKYVIAQANAALT 660
            EGPNIGLINSLAT+ARVNQYGFIE+PYRKV +G VT +V Y+SAMEEG+Y +AQAN+ L 
Sbjct: 599  EGPNIGLINSLATYARVNQYGFIEAPYRKVFDGRVTSDVVYLSAMEEGRYTVAQANSILD 658

Query: 661  EDGHFADDLISCRKASDFEMVQPQDIDYIDVSPKQLVSVAAALIPFLENDDANRALMGSN 720
             DG F +DL+SCR+A DF MV P +I+ IDVSPKQLVSVAAALIPFLENDDANRALMGSN
Sbjct: 659  ADGRFTEDLVSCRRAGDFVMVPPNEINMIDVSPKQLVSVAAALIPFLENDDANRALMGSN 718

Query: 721  MQRQAVPLVKAEAPYVGTGMEAAVARDSGATIAAKRAGVVQQVDATRIVIRATEDLKIAE 780
            MQRQAVPL++AEAP VGTGME AVARDSGA I AKR GVV QVDATR+VIRATE+ + + 
Sbjct: 719  MQRQAVPLIRAEAPLVGTGMEQAVARDSGAAITAKRTGVVDQVDATRVVIRATEETQASA 778

Query: 781  SGVDIYRLQKFQRSNQSTCINQRPLVKVGDLVGRGEILADGPLTEMGELALGRNVLVAFM 840
            SGVDIY L KFQRSNQ+TCI QRPLVKVGDL+ +G+I+ADGP T++GELALGRNVLVAFM
Sbjct: 779  SGVDIYNLLKFQRSNQNTCITQRPLVKVGDLIQKGDIIADGPSTQLGELALGRNVLVAFM 838

Query: 841  PWNGYNFEDSILISERIVSDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNL 900
            PWNGYNFEDSILISERIV DDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNL
Sbjct: 839  PWNGYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNL 898

Query: 901  DEAGIVYIGAEVQAGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRIPPGVT 960
            DEAGIVYIGAEV+ GDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLR+PPGV+
Sbjct: 899  DEAGIVYIGAEVKPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVS 958

Query: 961  GTVVEVRVFNRRGVEKDERALAIERQEIESLAKDRDDERAILEGSFARRLKELLIGQKVV 1020
            GT+VEVRVF+RRGVEKDERALAIER EIE LAKDRDDER ILE SF  RLK L+IG+KVV
Sbjct: 959  GTIVEVRVFSRRGVEKDERALAIERAEIERLAKDRDDERHILERSFFARLKALIIGKKVV 1018

Query: 1021 GGPRGMATGGVISEDLLSGYTAAQWRQIAVENDETATEIEGLKKAYEESIAKIQERFENK 1080
             GP+G+  G V+++  +     + WR IA+++D    + E LK+A+++ + K+QERFENK
Sbjct: 1019 SGPKGIKAGTVLADANMDELHPSTWRNIAIDDDAVMADAEALKRAFDQQVDKLQERFENK 1078

Query: 1081 VEKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLEDGT 1140
            VEKLQRGDELPPGV+KMVKVFVAVKRKLQPGDKMAGRHGNKGVIS+I P+EDMPYLEDG 
Sbjct: 1079 VEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRIVPLEDMPYLEDGQ 1138

Query: 1141 YVDIVLNPLGVPSRMNVGQILETHLGWACRGLGAQIGALLEQVKRGLIPINDLREKLDDV 1200
             VDIVLNPLGVPSRMNVGQILETHLGWAC GLG QIG +L++ KR    I DL+ KL DV
Sbjct: 1139 QVDIVLNPLGVPSRMNVGQILETHLGWACAGLGQQIGGMLDKYKRNAATIIDLKSKLKDV 1198

Query: 1201 YGPRHAKEDLAPMGDDQIKELAFNLRSGVPIATPVFDGARESDIVDMLRKAGLDSSGQVT 1260
            YG    ++++A + D++I ELA NL  GVPIATPVFDGARESDIV ML KAG  SSGQVT
Sbjct: 1199 YGDAIYEDEIAGLADNEITELAHNLTPGVPIATPVFDGARESDIVAMLTKAGRSSSGQVT 1258

Query: 1261 LSDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG 1320
            L DGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG
Sbjct: 1259 LVDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG 1318

Query: 1321 EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMR 1380
            EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIV+GDDTFEAGIPESFNVLVKE+R
Sbjct: 1319 EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDTFEAGIPESFNVLVKELR 1378

Query: 1381 SLGLDVELGQSSF 1393
            SLGL+VEL Q ++
Sbjct: 1379 SLGLNVELTQRNY 1391