Pairwise Alignments

Query, 1393 a.a., DNA-directed RNA polymerase, beta subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 1371 a.a., DNA-directed RNA polymerase subunit beta from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 1919 bits (4971), Expect = 0.0
 Identities = 984/1388 (70%), Positives = 1132/1388 (81%), Gaps = 35/1388 (2%)

Query: 4    SLTSRKRIRKDFGRIPTVAPMPNLIEVQKSSYDQFLQIGVPVDKRTDSGLQEVFKSVFPI 63
            S T +KRIRK FGRIP    MPNLIEVQ++SY+QFLQ  V    R + G++ VFKSVFPI
Sbjct: 19   SFTGKKRIRKSFGRIPEAIAMPNLIEVQRASYEQFLQREVRPGVRKEQGIEAVFKSVFPI 78

Query: 64   RDFSGKGELEFVAYELEEPKYDTDECQQRGMTFAAPLKVTLRLLVWDVDEETGARSIRDI 123
            +DF+ +  LE+V+YE EEPKYD +EC QR MT+AAPLKV LRL+V++ DEETGARS++DI
Sbjct: 79   KDFNERAILEYVSYEFEEPKYDVEECIQRDMTYAAPLKVKLRLIVFETDEETGARSVKDI 138

Query: 124  KEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAARVI 183
            KEQDVYMGD+PLMT  GTFI+NGTERVIVSQMHRSPGVFFDHDKGKTHSSGK LFAARVI
Sbjct: 139  KEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVI 198

Query: 184  PYRGSWLDFEFDAKDMVYVRIDRRRKLPVTTLLYALEGAAATALREARTAEGRSVDPSEI 243
            PYRGSWLDFEFDAKD+VYVRIDRRRKLP TT L  L                        
Sbjct: 199  PYRGSWLDFEFDAKDVVYVRIDRRRKLPATTFLMGL------------------------ 234

Query: 244  AGMTSEEILDFFYQKLSYKRDDKGWKVDFKPDHLRGVKLMFDLVDAATGEVKIEAGTKVT 303
             GM  EEIL  FY+ + Y++  +GW   +K +  RGVK  FDL+DA TGEV  +AG K++
Sbjct: 235  -GMDGEEILKTFYETVPYEKRGEGWVTPYKAERWRGVKPEFDLIDADTGEVVAQAGQKIS 293

Query: 304  PRAARKLAEDGMTEMRVFTEELVGRYAAEDMINEASGEIYAEAGEELTEAMLADMEKAGF 363
             RAA+KL E   T + +  + LV +Y A D +N  +GEI+AEAG+EL    +  +E+ GF
Sbjct: 294  ARAAKKLGET-TTSLSLAADALVTKYLANDAVNFETGEIFAEAGDELDAPTIEVLEQNGF 352

Query: 364  TELRVLHIDHVNVGPYVRNTLAMDKNTTREEALIDIYRVMRPGEPPTLETADALFKGLFF 423
            T + VL IDHV VG Y+RNTL +DKN  RE+AL D+YRVMRPGEPPT E A+A+F  LFF
Sbjct: 353  TTIEVLDIDHVTVGAYMRNTLRVDKNDNREDALFDVYRVMRPGEPPTPEAAEAMFNSLFF 412

Query: 424  DSERYDLSAVGRVKMNARLGFTMQEAPDTMRVLRKEDVLHIIRQLVELKDGKGEIDDIDH 483
            DSERYDLSAVGRVKMN RL     E  D +RVLRKEDVL +++ LV LKDG+GEIDDID+
Sbjct: 413  DSERYDLSAVGRVKMNMRL--ESPEVSDEIRVLRKEDVLKVLQILVGLKDGRGEIDDIDN 470

Query: 484  LGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDTVMPHDLINAKPAAAAVREFFG 543
            LGNRRVRSVGEL+ENQYRVGLLRMERAI+ERMSSVDIDTVMPHDLINAKPAAAAVREFFG
Sbjct: 471  LGNRRVRSVGELLENQYRVGLLRMERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFG 530

Query: 544  SSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGP 603
            SSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGP
Sbjct: 531  SSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGP 590

Query: 604  NIGLINSLATFARVNQYGFIESPYRKVVEGTVTDEVTYMSAMEEGKYVIAQANAALTEDG 663
            NIGLINSLAT ARVN+YGFIESPYR+V +G    EV Y+SAMEE KY IAQAN  L ++G
Sbjct: 591  NIGLINSLATHARVNKYGFIESPYRRVKDGQAQGEVVYISAMEESKYTIAQANIEL-KNG 649

Query: 664  HFADDLISCRKASDFEMVQPQDIDYIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQR 723
               +DL+  R   + +++    +D +DVSPKQ+VSVAAALIPFLENDDANRALMG+NMQR
Sbjct: 650  QIVEDLVPGRINGESQLLNKDAVDMMDVSPKQVVSVAAALIPFLENDDANRALMGANMQR 709

Query: 724  QAVPLVKAEAPYVGTGMEAAVARDSGATIAAKRAGVVQQVDATRIVIRATEDLKIAESGV 783
            QAVPLV+++AP VGTGMEA VA DSGA + A+R GVV+Q+D TRIV+RAT D+  A SGV
Sbjct: 710  QAVPLVQSDAPLVGTGMEAVVAVDSGAVVVARRDGVVEQIDGTRIVVRATGDVDAARSGV 769

Query: 784  DIYRLQKFQRSNQSTCINQRPLVKVGDLVGRGEILADGPLTEMGELALGRNVLVAFMPWN 843
            DIYRL KFQRSNQSTCINQRP+V+VGD V  G+++ADGP T++GELALGRN LVAFMPWN
Sbjct: 770  DIYRLSKFQRSNQSTCINQRPIVRVGDQVKGGDVIADGPSTDLGELALGRNALVAFMPWN 829

Query: 844  GYNFEDSILISERIVSDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLDEA 903
            GYNFEDSILISERIV DDVFTSIH+EEFEV ARDTKLG EEITRDIPNVGEEAL+NLDEA
Sbjct: 830  GYNFEDSILISERIVRDDVFTSIHLEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEA 889

Query: 904  GIVYIGAEVQAGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRIPPGVTGTV 963
            GIV IGAEVQ GDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLR+PPGV GT+
Sbjct: 890  GIVAIGAEVQPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTI 949

Query: 964  VEVRVFNRRGVEKDERALAIERQEIESLAKDRDDERAILEGSFARRLKELLIGQKVVGGP 1023
            V+VRVFNR GV+KDERA+AIER EIE L KDRDDE  ILE +   RLK L++G+  V GP
Sbjct: 950  VDVRVFNRHGVDKDERAMAIERAEIERLGKDRDDELKILERNVYGRLKPLIVGKNAVSGP 1009

Query: 1024 RGMATGGVISEDLLSGYTAAQWRQIAVENDETATEIEGLKKAYEESIAKIQERFENKVEK 1083
            +G+   G ++++ L+  +   W QIA+++++   E+E +K+ +E++  ++  RFE+KVEK
Sbjct: 1010 KGIGR-GELTDEKLAEVSRGLWWQIALDDEKAMGELEAMKRQFEDARKQLDRRFEDKVEK 1068

Query: 1084 LQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLEDGTYVD 1143
            LQRGDELPPGV+KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKI PIEDMP+LEDGT+VD
Sbjct: 1069 LQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKILPIEDMPHLEDGTHVD 1128

Query: 1144 IVLNPLGVPSRMNVGQILETHLGWACRGLGAQIGALLEQVKRGLIPINDLREKLDDVYGP 1203
            +VLNPLGVPSRMN+GQI ETHLGWA  GLG QI  LLE  + G      L ++L  +YG 
Sbjct: 1129 VVLNPLGVPSRMNIGQIFETHLGWAAAGLGKQISGLLEAWQAG-GQKQALIDRLTHIYG- 1186

Query: 1204 RHAKEDLAPMGDDQIKELAFNLRSGVPIATPVFDGARESDIVDMLRKAGLDSSGQVTLSD 1263
               +E   P  ++++ ELA NL  GVP ATPVFDGA   DI  +L +AGL+ S Q  L D
Sbjct: 1187 ---EETPLPQDEEELIELAKNLSKGVPFATPVFDGAHIGDIERLLEEAGLNKSAQSILYD 1243

Query: 1264 GRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1323
            G+TGE F R VTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME
Sbjct: 1244 GQTGEQFKRPVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME 1303

Query: 1324 VWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLG 1383
            VWALEAYGAAYTLQEMLTVKSDDV+GRTKVYEAIV+GDD+FEAGIPESFNVL+KEMRSLG
Sbjct: 1304 VWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDSFEAGIPESFNVLIKEMRSLG 1363

Query: 1384 LDVELGQS 1391
            L+VELG S
Sbjct: 1364 LNVELGNS 1371