Pairwise Alignments

Query, 1393 a.a., DNA-directed RNA polymerase, beta subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta from Alteromonas macleodii MIT1002

 Score = 1628 bits (4216), Expect = 0.0
 Identities = 823/1390 (59%), Positives = 1047/1390 (75%), Gaps = 53/1390 (3%)

Query: 1    MTKSLTSRKRIRKDFGRIPTVAPMPNLIEVQKSSYDQFLQIGVPVDKRTDSGLQEVFKSV 60
            M  S + +KRIRKDFG+ P V  +P L+ +Q  S+ +F++I    D     GL+  F+SV
Sbjct: 1    MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEI----DADAQYGLEAAFRSV 56

Query: 61   FPIRDFSGKGELEFVAYELEEPKYDTDECQQRGMTFAAPLKVTLRLLVWDVDEETGARSI 120
            FPI+ +SG  EL++V+Y L EP +D  ECQ RG+TF+APL+V LRL+++D D   G  ++
Sbjct: 57   FPIKSYSGSSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPG--TV 114

Query: 121  RDIKEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAA 180
            +DIKEQ+VYMG++PLMT NGTF+INGTERVIVSQ+HRSPGVFFDHDKGKTHSSGK L+ A
Sbjct: 115  KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNA 174

Query: 181  RVIPYRGSWLDFEFDAKDMVYVRIDRRRKLPVTTLLYALEGAAATALREARTAEGRSVDP 240
            RVIPYRGSWLDFEFD KD ++VRIDRRRKLP T +L ALE                    
Sbjct: 175  RVIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALE-------------------- 214

Query: 241  SEIAGMTSEEILDFFYQKLSYKRDDKGWKVDFKPDHLRGVKLMFDLVDAATGEVKIEAGT 300
                 MTSEEILD F+ K+S + D     ++  PD LRG    FD++D   G V +E G 
Sbjct: 215  -----MTSEEILDTFFDKVSVRIDKDKLMMEVVPDRLRGETAAFDIIDGE-GNVVVETGR 268

Query: 301  KVTPRAARKLAEDGMTEMRVFTEELVGRYAAEDMINEASGEIYAEAGEELTEAMLADMEK 360
            +++ R  R L + G+TE+ V  + L+GR  A   +NE +GE+   A +ELT   LA + +
Sbjct: 269  RISARHTRALEKAGLTELEVPADYLIGRVYAATYVNEDTGEVIVSANDELTLENLAALSQ 328

Query: 361  AGFTELRVLHIDHVNVGPYVRNTLAMDKNTTREEALIDIYRVMRPGEPPTLETADALFKG 420
            AG  E   L+I+ ++ G Y+ +TL +D +T R EAL++IYR+MRPGEPPT + A+ LF  
Sbjct: 329  AGIKEFETLYINELDHGSYISDTLRIDSSTNRLEALVEIYRMMRPGEPPTKDAAETLFDN 388

Query: 421  LFFDSERYDLSAVGRVKMNARLGFTMQEAPDTMRVLRKEDVLHIIRQLVELKDGKGEIDD 480
            LFF  ERYDLS+VGR+K N RLG   +E       L KED++ +++QL+ ++DGK E+DD
Sbjct: 389  LFFSDERYDLSSVGRMKFNRRLG---REELIGAGTLDKEDIISVMKQLIMIRDGKDEVDD 445

Query: 481  IDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDTVMPHDLINAKPAAAAVRE 540
            IDHLGNRR+RSVGE+ ENQ+RVGL+R+ERA++ER+S  D+D VMP DLINAKP +AAV+E
Sbjct: 446  IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKE 505

Query: 541  FFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP 600
            FFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETP
Sbjct: 506  FFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETP 565

Query: 601  EGPNIGLINSLATFARVNQYGFIESPYRKVVEGTVTDEVTYMSAMEEGKYVIAQANAALT 660
            EGPNIGLINSLA+FAR N +GF+E+P+R++V+G VTDE+ Y+SA+EEG++ IAQAN ALT
Sbjct: 566  EGPNIGLINSLASFARTNDFGFLETPFRRIVDGVVTDEIDYLSAIEEGQFAIAQANIALT 625

Query: 661  EDGHFADDLISCRKASDFEMVQPQDIDYIDVSPKQLVSVAAALIPFLENDDANRALMGSN 720
            E G   DDLI CR   +  ++  +DI Y+DVSP+Q+VS+AA++IPFLE+DDANRALMG+N
Sbjct: 626  EAGELVDDLIPCRHRGETTLMPKEDIKYMDVSPQQIVSIAASIIPFLEHDDANRALMGAN 685

Query: 721  MQRQAVPLVKAEAPYVGTGMEAAVARDSGATIAAKRAGVVQQVDATRIVIRATEDLKI-A 779
            MQRQAVP ++A+ P VGTGME  +A DSG T+ AKR GVV  VDA+RIVI+  ED  +  
Sbjct: 686  MQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAKRGGVVDYVDASRIVIKVDEDEMLPG 745

Query: 780  ESGVDIYRLQKFQRSNQSTCINQRPLVKVGDLVGRGEILADGPLTEMGELALGRNVLVAF 839
            E+G+DIY L K+ RSNQ+TCINQ+P   VGD +  G++LADGP T++G+LALG+N+ +AF
Sbjct: 746  EAGIDIYNLTKYTRSNQNTCINQKPTCSVGDPIVAGDVLADGPSTDLGDLALGQNMRIAF 805

Query: 840  MPWNGYNFEDSILISERIVSDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKN 899
            MPWNGYNFEDSILISER+  +D FT+IHI+E   +ARDTKLG EEI+ DIPNVGE AL  
Sbjct: 806  MPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGPEEISSDIPNVGESALSK 865

Query: 900  LDEAGIVYIGAEVQAGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRIPPGV 959
            LDE+G+VYIGAEV+ GDILVGKVTPKGE+ +TPEEKLLRAIFGEKASDV+DTSLR+P  V
Sbjct: 866  LDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSV 925

Query: 960  TGTVVEVRVFNRRGVEKDERALAIERQEIESLAKDRDDERAIL-EGSFARRLKELLIGQK 1018
             GTV++V+VF R GVEKD+RAL IE  ++  + KD  DE  IL +G FAR    LL    
Sbjct: 926  HGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKDLTDEFEILADGIFARAQTALL---- 981

Query: 1019 VVGGPRGMATGGVISEDLLSGYTAAQWRQIAVENDETATEIEGLKKAYEESIAKIQERFE 1078
                         + +  L      +W +IA+ +++   E++ +   + E      ++FE
Sbjct: 982  ----------RAGVDQAKLDSLPREKWFEIALNSEDAQLELDQIADQHAEIKLDFDKKFE 1031

Query: 1079 NKVEKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLED 1138
             K  K+ +GD+L PGVLK+VKV++AVKR +QPGDKMAGRHGNKGVIS I P+EDMPY  +
Sbjct: 1032 GKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTIQPVEDMPYDAN 1091

Query: 1139 GTYVDIVLNPLGVPSRMNVGQILETHLGWACRGLGAQIGALLEQVKRGLIPINDLREKLD 1198
            GT VDIVLNPLGVPSRMN+GQILETHLG A  GLG +I  ++++ +R L  + D  +K+ 
Sbjct: 1092 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAHGLGVKIDRMIKE-QRELAELRDFLKKVY 1150

Query: 1199 DVYGPRHAKEDLAPMGDDQIKELAFNLRSGVPIATPVFDGARESDIVDMLRKAGLDSSGQ 1258
            ++ G  H + D+    D +++ LA NLR GVP+ATPVFDGARES+I +ML+ A +  SGQ
Sbjct: 1151 EL-GENHQEVDIDSFTDHEVRRLAENLRKGVPVATPVFDGARESEIKEMLKLADIPESGQ 1209

Query: 1259 VTLSDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQR 1318
            + L DGRTG  F+R VTVGY+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQR
Sbjct: 1210 IALFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269

Query: 1319 FGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVKGDDTFEAGIPESFNVLVKE 1378
            FGEMEVWALEAYGAAYTLQEMLTVKSDDV+GRTK+Y+ IV GD   E G+PESFNVL+KE
Sbjct: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKE 1329

Query: 1379 MRSLGLDVEL 1388
            +RSLG+++EL
Sbjct: 1330 IRSLGINIEL 1339