Pairwise Alignments

Query, 330 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

Subject, 316 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Sphingobium sp. HT1-2

 Score =  144 bits (363), Expect = 3e-39
 Identities = 101/305 (33%), Positives = 147/305 (48%), Gaps = 32/305 (10%)

Query: 1   MSVETVAVTQDEDGSRLDRWFKRRYPALTHGRLEKLLRTGQIRVDGKRVKSGERLEAGQQ 60
           +S+    + + + G RLDR      P L+  R++ L+  GQI   G+ +    ++  GQ 
Sbjct: 5   VSIIETTIGEAQAGLRLDRALAELLPDLSRERIKALIVEGQIVSGGRSLNPSMKVAVGQD 64

Query: 61  VRVPPLGDEAPSPSSSGHAVPRPAA-EGEIRALRRAILHEDAHLIVINKEAGLAVQGGTG 119
             +                +P P A +   + +   I+HEDA LIV++K AGL V    G
Sbjct: 65  YSI---------------TLPAPVALDAVAQDIPLDIVHEDADLIVVDKPAGLVVHPAAG 109

Query: 120 TP---------HHLDGMLESLADGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFRS 170
                      HH DG L  +  G   P +VHR+DKDTSG+LV+A++  A   L   F+ 
Sbjct: 110 NLDGTLVNALLHHCDGQLSGIG-GVARPGIVHRIDKDTSGLLVVAKSDKAHEGLARQFKD 168

Query: 171 REALKVYWAIVVGRPPMLQGTIKGALAKVAGGRGERMEINEEEGKRAVTDFRVVDQAAKA 230
               ++Y AIV G P    GT+   + +    R +     E  GK AVT +RV+++  + 
Sbjct: 169 HSIDRLYAAIVYGIPAPGSGTVDAWIGRSDADRKKMAVHREGRGKHAVTHYRVMER-LRG 227

Query: 231 CAWVELHPRTGRTHQLRVHCLEMGTPILGDGKYG----GPGAFLEGTELPKRMHLHARAL 286
            A VE    TGRTHQ+RVH   +G P++GD  YG    G  + LE     KR  LHA+ L
Sbjct: 228 AAMVECRLETGRTHQVRVHMAHLGHPLIGDPVYGRDRKGFKSILETLGF-KRQALHAKRL 286

Query: 287 ALPHP 291
              HP
Sbjct: 287 GFIHP 291