Pairwise Alignments

Query, 330 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

Subject, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas putida KT2440

 Score =  183 bits (464), Expect = 6e-51
 Identities = 119/312 (38%), Positives = 169/312 (54%), Gaps = 8/312 (2%)

Query: 3   VETVAVTQDEDGSRLDRWFKRRYPALTHGRLEKLLRTGQIRVDGKRVKSGERLEAGQQVR 62
           V+ + V  +  G R+D +       +    + ++LR G++RV+  RVK   +++AG  VR
Sbjct: 11  VQLIEVAPELAGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKIQAGDIVR 70

Query: 63  VPPLGDEAPSPSSSGHAVPRPAAEGEIRALRRAILHEDAHLIVINKEAGLAVQGGTGTPH 122
           VPP+    P         P P A+G ++ L  AI++ED  LIV+NK AG+AV GG+G   
Sbjct: 71  VPPV--RLPERDE-----PAPVAQGLLQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSF 123

Query: 123 HLDGMLESLADGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFRSREALKVYWAIVV 182
            +   L  L    +   LVHRLD+DTSG+L++A+ ++  R L +A R     K Y A+V 
Sbjct: 124 GVIEALRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVR 183

Query: 183 GRPPMLQGTIKGALAKVAGGRGERMEINEEEGKRAVTDFRVVDQAAKACAWVELHPRTGR 242
           G  P  +  +   L K     GERM    EEGK A+T FRV+ +       VE  P TGR
Sbjct: 184 GHWPTSKKQVNAPLLKSNLRSGERMVEVNEEGKEALTLFRVLRRFGDFATIVEARPITGR 243

Query: 243 THQLRVHCLEMGTPILGDGKYGGPGAFLEGTEL-PKRMHLHARALALPHPAGGVLEIIAP 301
           THQ+RVH L  G  I GD KYG      E  EL  KR+ LHA AL +P P GG L++ AP
Sbjct: 244 THQIRVHTLHAGHMIAGDSKYGDEDFSREIRELGGKRLFLHAYALTVPLPDGGELKLEAP 303

Query: 302 PPPHFVESLKTL 313
               + ++++ L
Sbjct: 304 VDEVWAKTVERL 315