Pairwise Alignments

Query, 330 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

Subject, 341 a.a., RluA family pseudouridine synthase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  261 bits (668), Expect = 1e-74
 Identities = 148/330 (44%), Positives = 197/330 (59%), Gaps = 14/330 (4%)

Query: 3   VETVAVTQDEDGSRLDRWFKRRYPALTHGRLEKLLRTGQIRVDGKRVKSGERLEAGQQVR 62
           V T+ V +DEDG RLDRWF+RR+P L++ +++K+ R+GQIRVDG R+K   RL AG  VR
Sbjct: 15  VLTIYVAEDEDGIRLDRWFRRRWPHLSNIQVQKMARSGQIRVDGARIKPEGRLTAGAAVR 74

Query: 63  VPPLGDEAPSPSSSGHAVPRPAAEGEIRALRRAILHEDAHLIVINKEAGLAVQGGTGTPH 122
           VPP+ D+    +   H +    +E +I   +  +L+ED  +I +NK  GLAVQGGT T  
Sbjct: 75  VPPIPDDTSRQAGDAHTL----SERDIAFAKSLVLYEDDMVIALNKPHGLAVQGGTKTSR 130

Query: 123 HLDGMLESLADGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFRSREALKVYWAIVV 182
           H+D +L +  +G E PRLVHRLD+DTSGVL+L +   AA+ L  AF  R+A K YWAIV+
Sbjct: 131 HVDRLLSAWGEGLERPRLVHRLDRDTSGVLLLGKGPEAAKRLAGAFARRQAKKTYWAIVI 190

Query: 183 GRPPMLQGTIKGALAKVAGGRGERMEINEEEGKR---AVTDFRVVDQAAKACAWVELHPR 239
           G P    G I   L K      E M   E +  R   A T F  + +A+   AW+ L P 
Sbjct: 191 GNPKPYSGQIDMPLKKTGINDFEMMRPAERKDPRAEPAETAFSTISRASHRAAWMALRPF 250

Query: 240 TGRTHQLRVHCLEMGTPILGDGKYGGPGAFLEGTEL--PKRMHLHARALALPHPAGGVLE 297
           TGRTHQLR H   +G PILGD KYG      +  EL  P ++ LHAR++ L HP GGVL+
Sbjct: 251 TGRTHQLRAHMAGIGHPILGDPKYGDE----KSRELSGPLKLQLHARSIELDHPRGGVLK 306

Query: 298 IIAPPPPHFVESLKTLGFALSDA-PNPFEG 326
           + AP  P         GF+  +A  +PF G
Sbjct: 307 VTAPLSPEMKAGFAHFGFSDDEAEDDPFLG 336