Pairwise Alignments

Query, 1301 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation (NCBI) from Rhodospirillum rubrum S1H

Subject, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  484 bits (1247), Expect = e-140
 Identities = 276/681 (40%), Positives = 403/681 (59%), Gaps = 9/681 (1%)

Query: 612  IADHRRKQMVLRESEARFRATFEQAAVGIA-HLDPDGHWLRVNHKLCDIVGYPPDELLTL 670
            I+  +  Q  L+ SE +F   F  +  G+      DG  L VN   C + GY  +  +  
Sbjct: 546  ISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVNEGFCRLTGYDLNPTIDQ 605

Query: 671  SFQDITHPDDLRADLRQMEALLA-GQIDTYTIEKRYIRKTGESLWINLTVSLVRDIH-NA 728
            +  D+    DL    R ++ L   G +  +T   R  R  G+   I L     R +    
Sbjct: 606  TSLDLGIWVDLNERKRLVDQLNRDGFVRDFTCHIR--RSDGQ---IRLCELSARPLPITG 660

Query: 729  PAYFISVVENIQSRKEAELQLLLASAVFSNSMEGIFVTDLKGSILAVNPAFSQITLYEAA 788
                +++  +I  R   + +L LA+ VF N+ EG+ +TD+   I AVN AFS+IT Y   
Sbjct: 661  VDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEI 720

Query: 789  EVLGRNARILQSGRQNREFYVALWQDVLTIGSWRGEIWNRRRDGEVFPEWLSISSVRNHQ 848
            E LG+  R+L SG+ +  FY+A+W  +   G W+GEI+N+R++GE++P WL+IS+VRN  
Sbjct: 721  EALGQTPRLLASGQHDSAFYLAMWHQLTAEGHWQGEIYNKRKNGELYPSWLTISAVRNSD 780

Query: 849  GEVTNYIGIFSDLSRIKHSEAKFHHLAHHDPLTGLPNRLLLRSRLDHAIERARRTGGRCA 908
             E+T+++ +F+D+S IKH++AK  + AHHDPLTGLPNR L  +RL   +  A+ +  + A
Sbjct: 781  REITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGA 840

Query: 909  VLFLDLDRFKMINDSLGHRAGDTLLRTLGARLTACLGDTGTLARLGGDEFVAVIEDIDGI 968
            VLFLDLDRFK INDSLGH  GD LL+ +  RL   + D  T+ARLGGDEF+ ++  +   
Sbjct: 841  VLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKP 900

Query: 969  PAVGTIALTMLERLREPCRLSEGPEVCIGGSVGISLFPEDGDNPDTLLQHADTALGQVKG 1028
                TIA  +L     P +  E  E     S+GISL+P+DG +  TL+++AD A+ + K 
Sbjct: 901  SDASTIANKLLACFNAPFQAGEH-EFFTSASIGISLYPQDGTDVSTLIRNADAAMYRSKA 959

Query: 1029 AGGGAYGFYTRTLTERISARLGLEAGLRHALEQGDFLLHYQPLIALGTGEVEGVEALVRW 1088
             G      YTR LT + S R+ LE  LR A+E+ +  L +QP ++L T  + G EAL+RW
Sbjct: 960  KGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVGAEALIRW 1019

Query: 1089 AGGDGLLIPPDRFIPLAEDTGLIVPLGEWVLGEACRTMQRWRSQGMPLTVLAVNLSPRQF 1148
            +      +PP+ FI LAE+ G I+ LG+WVL +ACR MQ W+    P   L++NL+  Q 
Sbjct: 1020 SHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHYQPFGPLSINLAGAQL 1079

Query: 1149 RDHAIPALVRRVLEQTGLPASVLELEITESAIMEQGAAAEAQMTGLKHLGVRLAIDDFGT 1208
            R   +   + ++L+   L A  L+LEITE+ IM Q   A A +  LK LGV+LAIDDFGT
Sbjct: 1080 RHPHLARRIEQLLKHHQLKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQLAIDDFGT 1139

Query: 1209 GYSSLANLRRFPIDKIKIDQSFVRDIPRDAAAEEITATIIAMGRTLKLHVLAEGVETTDQ 1268
            GYSSL+ L+R P+D +KID+SF+R +P D     I   IIA+GR+++L ++AEGVE   Q
Sbjct: 1140 GYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIAEGVENQAQ 1199

Query: 1269 LDFLSRKQCDSAQGYLFSRPI 1289
              FL+ + C+  QGY+ S P+
Sbjct: 1200 QRFLAAEGCEQIQGYIVSLPL 1220



 Score = 48.9 bits (115), Expect = 3e-09
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 10/181 (5%)

Query: 612 IADHRRKQMVLRESEARFRATFEQAA-VGIAHLDPDGHWLRVNHKLCDIVGYPPDELLTL 670
           I++ +R +  LR SE +F + F+Q   + +     DG  L VN    + +G PPD+++  
Sbjct: 422 ISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFEEQIGLPPDQVIGR 481

Query: 671 SFQDITHPDDLRADLRQMEALLAGQIDTYTIEKRYIRKTGESLWINLTVSLVRDIHNAPA 730
           +  D+       +    +E L  G I    +E  + R  G+ L+  LT +   ++   PA
Sbjct: 482 TATDLDLWGVEGSGPLLLERLHQGGI--RNLEMSFRRSNGQ-LFTGLTSAETFELDGTPA 538

Query: 731 YFISVVENIQSRKEAELQLLLASAVFSN----SMEGIFVT-DLKGSILAVNPAFSQITLY 785
             ++ V +I   KE + QL  +   F+     S +G+ ++    G +L VN  F ++T Y
Sbjct: 539 LVVA-VRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVNEGFCRLTGY 597

Query: 786 E 786
           +
Sbjct: 598 D 598