Pairwise Alignments

Query, 1301 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation (NCBI) from Rhodospirillum rubrum S1H

Subject, 631 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  492 bits (1267), Expect = e-143
 Identities = 262/591 (44%), Positives = 365/591 (61%), Gaps = 4/591 (0%)

Query: 707  RKTGESLWINLTVSLVRDIHNAPAYFISVVENIQSRKEAELQLLLASAVFSNSMEGIFVT 766
            R+    +W+ L+  L+         FI      + R E   +L +A+AVF +++EG+ VT
Sbjct: 44   RQINVVVWVLLSALLIYVSRVRLLNFIG--HGARLRCEDRERLRMAAAVFDSTLEGVLVT 101

Query: 767  DLKGSILAVNPAFSQITLYEAAEVLGRNARILQSGRQNREFYVALWQDVLTIGSWRGEIW 826
            D +G I+ VN AF +IT Y+  EV+G+     +SG     FY  ++  +   G W GEIW
Sbjct: 102  DRQGLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHHGLAFYQEVFATLAEKGEWSGEIW 161

Query: 827  NRRRDGEVFPEWLSISSVRNHQGEVTNYIGIFSDLSRIKHSEAKFHHLAHHDPLTGLPNR 886
            NRR+ GE++P+W +I ++R+ +GE+++Y+ +FSD+S IKHSE +  +LAHHDPLTGLPNR
Sbjct: 162  NRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSDISAIKHSEQELAYLAHHDPLTGLPNR 221

Query: 887  LLLRSRLDHAIERARRTGGRCAVLFLDLDRFKMINDSLGHRAGDTLLRTLGARLTACLGD 946
            LL   RL+ A+  A+     CA+L LDLD F+ IND LGH  GD LL+ +G RL   LG+
Sbjct: 222  LLFTDRLEQALAAAQANKRGCALLLLDLDHFQSINDGLGHTIGDQLLKLVGERLGEVLGN 281

Query: 947  TGTLARLGGDEFVAVIEDIDGIPAVGTIALTMLERLREPCRLSEGPEVCIGGSVGISLFP 1006
              TLARLGGDEF  ++E+   +   G +A  ++ER+REP +  +G  + I  SVGISL+P
Sbjct: 282  GVTLARLGGDEFGVLVENCQQVGQAGKLAQCIIERMREPFQF-DGNRLFISASVGISLYP 340

Query: 1007 EDGDNPDTLLQHADTALGQVKGAGGGAYGFYTRTLTERISARLGLEAGLRHALEQGDFLL 1066
             D    + LL++AD+AL + K  G   Y  YT  LT     R+   A LR ALEQ +  +
Sbjct: 341  SDALGAEQLLRNADSALYKAKSNGRACYALYTEELTAHAQHRVETAAELRRALEQDELRV 400

Query: 1067 HYQPLIALGTGEVEGVEALVRWAGGDGLLIPPDRFIPLAEDTGLIVPLGEWVLGEACRTM 1126
            ++QP+  L +G   GVE LVRW      L+PP  FIP+AE TGLI  +  WVL +ACR M
Sbjct: 401  YFQPVHDLASGRQVGVETLVRWQHPRRGLVPPGEFIPIAERTGLIAEIDTWVLRQACRQM 460

Query: 1127 QRWRSQGMPLTVLAVNLSPRQFRDHAIPALVRRVLEQTGLPASVLELEITESAIMEQGAA 1186
             +W++QG  L  + VN+S R F  H +   V  VL  TGL  ++LELE+TESA+ME    
Sbjct: 461  VQWQAQGRQLAFVGVNISSRLFGQHELYRQVAEVLHDTGLAPALLELEVTESAVMEDPEV 520

Query: 1187 AEAQMTGLKHLGVRLAIDDFGTGYSSLANLRRFPIDKIKIDQSFVRDIPRDAAAEEITAT 1246
            A  Q+  L+ LGV LAIDDFGTGYSSL  L+R P+ K+KIDQ FV  +P D     I   
Sbjct: 521  ALEQLHRLRELGVTLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRV 580

Query: 1247 IIAMGRTLKLHVLAEGVETTDQLDFLSRKQCDSAQGYLFSRPITAAALEKW 1297
            IIA+ R++ + V AEG+E  +Q  FL +++C   QGY F RP+ A  L +W
Sbjct: 581  IIALARSMGMQVHAEGIEQAEQASFLLQEECQLGQGYWFGRPVPAEDL-RW 630



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 1/127 (0%)

Query: 623 RESEARFRATFEQAAVGIAHLDPDGHWLRVNHKLCDIVGYPPDELLTLSFQDITHPDDLR 682
           RE      A F+    G+   D  G  + VN     I GY  DE++              
Sbjct: 81  RERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSKFKSGHHGL 140

Query: 683 ADLRQMEALLAGQIDTYTIEKRYIRKTGESLWINLTVSLVRDIHNAPAYFISVVENIQSR 742
           A  +++ A LA +   ++ E    RK+GE      T+  +RD     +++++V  +I + 
Sbjct: 141 AFYQEVFATLA-EKGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHYVAVFSDISAI 199

Query: 743 KEAELQL 749
           K +E +L
Sbjct: 200 KHSEQEL 206