Pairwise Alignments

Query, 179 a.a., Sigma-24 (FecI) (NCBI) from Rhodospirillum rubrum S1H

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 65.1 bits (157), Expect = 6e-16
 Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 24/173 (13%)

Query: 11  FLRHRRALIDYATPIVGDSMRAEDVVQEAWLRFDSASPSPTSTEAGRGTALERPVGYLYK 70
           FL H   LI   T  +    +AED+  +A++R           E  R   +E+P  YL++
Sbjct: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRV---------LETPR-EQVEQPRAYLHQ 56

Query: 71  IVRNLAVDLSRR------LKREAWMGDGGASLDGVAAGAPSPEQEAIGRDDLRAVAQALA 124
             RN+AVD  RR      L+REA+        +  A G+  PE      +   +V +ALA
Sbjct: 57  AARNIAVDGFRREDRRQALEREAF--------EEGATGSGDPEAYVHALELADSVERALA 108

Query: 125 SLPPRTRTAFDLHRFENCTFAEIGQRLGISQTRAHSLVHEALAHCLDHLDRSS 177
            LP   R  F   + E  T AEI +R+G+S+      +   L H  +HLD S+
Sbjct: 109 ELPLNCRQVFIWQKLEGLTQAEIAERMGLSKNMVEKYMIRTLRHLREHLDVSA 161