Pairwise Alignments

Query, 392 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 238 a.a., glycine/betaine ABC transporter permease from Pseudomonas simiae WCS417

 Score =  116 bits (290), Expect = 7e-31
 Identities = 86/242 (35%), Positives = 125/242 (51%), Gaps = 27/242 (11%)

Query: 141 GALFGALGLLLASGQWDGVSVLKEYANRADAFWREARTHLALALGAVAVACAVGLPLGVL 200
           GA+  AL  LL    W G++ ++ Y +    F+ +A  HL L L ++  A  VG+P G+L
Sbjct: 12  GAVVVALLALLV--HWIGINTIELYRDDL-LFYLQA--HLILVLVSMLAALVVGIPAGIL 66

Query: 201 CHR--VAWLRGMVLQGLTIIQTIPSIALFGILMAPLGWLAAHVPAIAALGVRGIGATPAL 258
             R  +       +Q   I  T+P +A+  I                ALGV GIG+ PA+
Sbjct: 67  LSRPNMVGRAERFMQIFNIGNTVPPLAVLAI----------------ALGVLGIGSGPAI 110

Query: 259 VALILYALLPVVANTVVGLAQVPAATVDAARGMGMGRGRLLREVELPLALPVILTGVRIV 318
            AL L +LLP+V NT  GL  V  +  +AA G+GM   ++L  VELP A+P+I+ GVR+ 
Sbjct: 111 FALFLASLLPIVRNTYEGLKNVQGSLKEAAVGIGMTPRQVLFRVELPNAVPIIIGGVRVA 170

Query: 319 LVQAIGLTTVAALIGGGGFGTFVFQGVGQAAMDLVLLGALPTVALAFGAAVILDALIEGA 378
           L   +G   +A LIG    G+ +F G+       +LLGA  T  L    A++LD L+  A
Sbjct: 171 LAINVGTAPLAFLIGANSLGSLIFPGIALNNQPQLLLGAACTALL----ALLLDGLVTMA 226

Query: 379 RR 380
            R
Sbjct: 227 SR 228