Pairwise Alignments

Query, 860 a.a., ATP-dependent helicase HrpB (NCBI) from Rhodospirillum rubrum S1H

Subject, 842 a.a., ATP-dependent helicase HrpB from Pseudomonas putida KT2440

 Score =  718 bits (1853), Expect = 0.0
 Identities = 425/850 (50%), Positives = 533/850 (62%), Gaps = 27/850 (3%)

Query: 25  LPIDPVLPALLEALASHGRAVLIAPPGAGKTTRVPPALLGALWLGGQKVVMLEPRRLATR 84
           LPID  LPAL +AL +    VL APPGAGKTTRVP ALL   WL GQ ++MLEPRRLA R
Sbjct: 4   LPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQSILMLEPRRLAAR 63

Query: 85  AAARRMAFEAGEAVGQRFGFRVRGESRSGPLTRVEVMTEGILTRRIQDDPELAGVGCVIL 144
           AAA R+A E GE VG+  G+R+R +S+ GP TR+EV+TEGILTRR+Q DP L GVG +I 
Sbjct: 64  AAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGLLIF 123

Query: 145 DEFHERGLQGDLAFALLREIQGALR--PDLRLLVMSATLDGAAIAALMDDAPVIESHGRA 202
           DEFHER L  DLA AL    +  LR  P L++L+MSATL+G  ++ L+DDAPV+ S GR 
Sbjct: 124 DEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVVSSEGRM 183

Query: 203 FPVTITHGERP--AARDLGPAMARTILRALEDEPGSVLAFLPGEREIAAVAGALARALPA 260
            PV I  G RP      + P +   +L AL D+ GSVL FLPG+ EI  V  +L   L A
Sbjct: 184 HPVDIRWG-RPFQPGEFIEPRVVDCVLHALADQAGSVLVFLPGQAEIRRVHQSLQEVLGA 242

Query: 261 --DTVLRPLYGALPPAEQDAAISPCPPGQRKVVLATDIAETSLTIEGVRIVVDSGLRRSP 318
             + +L PL+G L    Q AAI P   G RKVVLAT+IAETSLTI+GVR+V+D+GL R P
Sbjct: 243 RPEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAGLARVP 302

Query: 319 RFDPQTGLSRLDTVRISQAGAEQRRGRAGRLEPGVCLRLWPEAEHRALPAQETPEILAAD 378
           RFDP +G++RLDT RIS+A A QR GRAGRLEPGVC RLW EA+H  L A  + EIL AD
Sbjct: 303 RFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEILQAD 362

Query: 379 LAPLALELARWGARDAAALCWPTPPPPGPLAQARDLLTSLGALEPAG--GLSAHGAAMAA 436
           LA LAL+LARWG      L W   PP    AQA+DLL  L A  P     LS HG AMA 
Sbjct: 363 LAGLALQLARWGV-TPEQLRWLDQPPAAAYAQAQDLLARLSAFRPGSRDTLSEHGQAMAE 421

Query: 437 LPLHPRLAHMVLAAKADGADDGALACLLAALLAERDILRPGPGAARDRDLTTRLEILIGQ 496
           LP HPR+AH++L  +  G     +AC +AALL ERDI R G GA    DL +RL ++ G+
Sbjct: 422 LPAHPRIAHLLLRGQDLGL--AQMACDVAALLGERDIQR-GGGA----DLHSRLALVSGE 474

Query: 497 GRRAPAGQILRQPTLGAVRDEAARLRQLAGIAASASPEPARCGRVLARAYPDRIAQARPG 556
            + A  GQ   Q      R     LR   G   +    P   G +LA AYPDR+AQ R  
Sbjct: 475 SKAARGGQGGVQRARQLARQYRGLLRGKVGAPVADPDHPRWLGALLALAYPDRVAQQRRA 534

Query: 557 QPGRFLLSSGRGALIDVGDPLAAAAFLAVAEVDG--AGSEARVFLAAPLDRADLEELFDE 614
               + L++GR AL    D L    +L +A++       E R++LAA  D A LE +  E
Sbjct: 535 GGAEYRLANGRAALFGEVDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALLEGVLAE 594

Query: 615 ALRPCETVTWDPRAEAVVARVERRLGALVFESRDLPDRADPARTTPAVCAGIRRLGLGCL 674
            +   + + WD R + + A  + ++G LV     LP   D ART  A+   +RR GL  L
Sbjct: 595 QVERVDILDWDEREQVLRAERQVKVGELVLSREPLPGLDDEARTR-ALLGLVRRKGLNLL 653

Query: 675 PWTRETDRLRARVAFLHRVHSADD----WPDLSDDALLASLADWLGPWLDGITRRSAFAR 730
            WT E  + +ARVA L ++    D    WPDL D+ALLASL DWL P+L  ++R S FA 
Sbjct: 654 TWTPELRQWQARVALLRQLDLQKDGHSEWPDLGDEALLASLEDWLQPYLSKVSRLSHFAA 713

Query: 731 IDLMAALKALIGWRRLADLDRLAPAQMDVPSGVKVALDY-EVPDGPVLAARVQQLFGLTR 789
           +DL + L+ L+ W     L+  APA + VPSG  + LDY E P  P+LA R+Q+LFGL  
Sbjct: 714 LDLPSMLRNLLPWPLPQRLEEQAPAHLAVPSGSNIRLDYSETP--PILAVRLQELFGLAD 771

Query: 790 TPAVLDGGHPVLVHLLSPAGRPLQVTRDLAGFWKGSYAEVRKDMRGRYPKHPWPEDPTGA 849
           TP + +G   V +HLLSPA RP+QVT+DLA FW+ +YAEV+KD++GRYPKH WP+DP  A
Sbjct: 772 TPRIANGRQQVKLHLLSPARRPVQVTQDLASFWRTTYAEVKKDLKGRYPKHYWPDDPLVA 831

Query: 850 EATNRVKPRG 859
           EAT R KPRG
Sbjct: 832 EATARAKPRG 841



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 74/281 (26%), Positives = 103/281 (36%), Gaps = 57/281 (20%)

Query: 19  PFSPGPLPIDPVLPALLEALASHGRAVLIAPPGAGKTTRV-----------PPALL---- 63
           PF PG      V+  +L ALA    +VL+  PG  +  RV           P  LL    
Sbjct: 193 PFQPGEFIEPRVVDCVLHALADQAGSVLVFLPGQAEIRRVHQSLQEVLGARPEILLCPLH 252

Query: 64  GALWLGGQKVVMLEPRR------LATRAAAR-------RMAFEAGEAVGQRFG------- 103
           G L L  Q+  +  P +      LAT  A         R+  +AG A   RF        
Sbjct: 253 GELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAGLARVPRFDPGSGMTR 312

Query: 104 ------FRVRGESRSGPLTRVEVMTEGILTRRIQDDPELAGVGCVILDEFHERGLQGDLA 157
                  R     R+G   R+E      L    Q D +LA  G   +       LQ DLA
Sbjct: 313 LDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHD-QLAAHGSAEI-------LQADLA 364

Query: 158 FALLREIQGALRPD-LRLLVMSATLDGAAIAALMDDAPVIESHGRAFPVTIT-HGERPAA 215
              L+  +  + P+ LR L        AA A   D    + +       T++ HG+  A 
Sbjct: 365 GLALQLARWGVTPEQLRWLDQP---PAAAYAQAQDLLARLSAFRPGSRDTLSEHGQAMAE 421

Query: 216 RDLGPAMARTILRALE---DEPGSVLAFLPGEREIAAVAGA 253
               P +A  +LR  +    +    +A L GER+I    GA
Sbjct: 422 LPAHPRIAHLLLRGQDLGLAQMACDVAALLGERDIQRGGGA 462